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WFDC3 (WAP four-disulfide core domain 3)

Identity

Alias_symbol (synonym)dJ447F3.3
WAP14
Other alias
HGNC (Hugo) WFDC3
LocusID (NCBI) 140686
Atlas_Id 75753
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 44402847 and ends at 44420547 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WFDC3   15957
Cards
Entrez_Gene (NCBI)WFDC3  140686  WAP four-disulfide core domain 3
AliasesWAP14; dJ447F3.3
GeneCards (Weizmann)WFDC3
Ensembl hg19 (Hinxton)ENSG00000124116 [Gene_View]  chr20:44402847-44420547 [Contig_View]  WFDC3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000124116 [Gene_View]  chr20:44402847-44420547 [Contig_View]  WFDC3 [Vega]
ICGC DataPortalENSG00000124116
TCGA cBioPortalWFDC3
AceView (NCBI)WFDC3
Genatlas (Paris)WFDC3
WikiGenes140686
SOURCE (Princeton)WFDC3
Genetics Home Reference (NIH)WFDC3
Genomic and cartography
GoldenPath hg19 (UCSC)WFDC3  -     chr20:44402847-44420547 -  20q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)WFDC3  -     20q13.12   [Description]    (hg38-Dec_2013)
EnsemblWFDC3 - 20q13.12 [CytoView hg19]  WFDC3 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIWFDC3 [Mapview hg19]  WFDC3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF488306 AL591713 BC026014 BC102013 BC102014
RefSeq transcript (Entrez)NM_080614 NM_181522 NM_181525 NM_181530
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)WFDC3
Cluster EST : UnigeneHs.419126 [ NCBI ]
CGAP (NCI)Hs.419126
Alternative Splicing GalleryENSG00000124116
Gene ExpressionWFDC3 [ NCBI-GEO ]   WFDC3 [ EBI - ARRAY_EXPRESS ]   WFDC3 [ SEEK ]   WFDC3 [ MEM ]
Gene Expression Viewer (FireBrowse)WFDC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140686
GTEX Portal (Tissue expression)WFDC3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUB2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUB2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUB2
Splice isoforms : SwissVarQ8IUB2
PhosPhoSitePlusQ8IUB2
Domaine pattern : Prosite (Expaxy)WAP (PS51390)   
Domains : Interpro (EBI)WAP    Wfdc3   
Domain families : Pfam (Sanger)WAP (PF00095)   
Domain families : Pfam (NCBI)pfam00095   
Domain families : Smart (EMBL)WAP (SM00217)  
Conserved Domain (NCBI)WFDC3
DMDM Disease mutations140686
Blocks (Seattle)WFDC3
SuperfamilyQ8IUB2
Human Protein AtlasENSG00000124116
Peptide AtlasQ8IUB2
HPRD15676
IPIIPI00161276   IPI00791081   IPI00333819   IPI00852998   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUB2
IntAct (EBI)Q8IUB2
FunCoupENSG00000124116
BioGRIDWFDC3
STRING (EMBL)WFDC3
ZODIACWFDC3
Ontologies - Pathways
QuickGOQ8IUB2
Ontology : AmiGOserine-type endopeptidase inhibitor activity  extracellular region  negative regulation of endopeptidase activity  
Ontology : EGO-EBIserine-type endopeptidase inhibitor activity  extracellular region  negative regulation of endopeptidase activity  
NDEx NetworkWFDC3
Atlas of Cancer Signalling NetworkWFDC3
Wikipedia pathwaysWFDC3
Orthology - Evolution
OrthoDB140686
GeneTree (enSembl)ENSG00000124116
Phylogenetic Trees/Animal Genes : TreeFamWFDC3
HOVERGENQ8IUB2
HOGENOMQ8IUB2
Homologs : HomoloGeneWFDC3
Homology/Alignments : Family Browser (UCSC)WFDC3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWFDC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WFDC3
dbVarWFDC3
ClinVarWFDC3
1000_GenomesWFDC3 
Exome Variant ServerWFDC3
ExAC (Exome Aggregation Consortium)WFDC3 (select the gene name)
Genetic variants : HAPMAP140686
Genomic Variants (DGV)WFDC3 [DGVbeta]
DECIPHER (Syndromes)20:44402847-44420547  ENSG00000124116
CONAN: Copy Number AnalysisWFDC3 
Mutations
ICGC Data PortalWFDC3 
TCGA Data PortalWFDC3 
Broad Tumor PortalWFDC3
OASIS PortalWFDC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWFDC3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWFDC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WFDC3
DgiDB (Drug Gene Interaction Database)WFDC3
DoCM (Curated mutations)WFDC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WFDC3 (select a term)
intoGenWFDC3
Cancer3DWFDC3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWFDC3
Genetic Testing Registry WFDC3
NextProtQ8IUB2 [Medical]
TSGene140686
GENETestsWFDC3
Huge Navigator WFDC3 [HugePedia]
snp3D : Map Gene to Disease140686
BioCentury BCIQWFDC3
ClinGenWFDC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140686
Chemical/Pharm GKB GenePA38067
Clinical trialWFDC3
Miscellaneous
canSAR (ICR)WFDC3 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWFDC3
EVEXWFDC3
GoPubMedWFDC3
iHOPWFDC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:44 CET 2017

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