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WFDC5 (WAP four-disulfide core domain 5)

Identity

Alias_symbol (synonym)WAP1
dJ211D12.5
Other aliasPRG5
HGNC (Hugo) WFDC5
LocusID (NCBI) 149708
Atlas_Id 490
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 45109452 and ends at 45115172 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WFDC5   20477
Cards
Entrez_Gene (NCBI)WFDC5  149708  WAP four-disulfide core domain 5
AliasesPRG5; WAP1; dJ211D12.5
GeneCards (Weizmann)WFDC5
Ensembl hg19 (Hinxton)ENSG00000175121 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175121 [Gene_View]  chr20:45109452-45115172 [Contig_View]  WFDC5 [Vega]
ICGC DataPortalENSG00000175121
TCGA cBioPortalWFDC5
AceView (NCBI)WFDC5
Genatlas (Paris)WFDC5
WikiGenes149708
SOURCE (Princeton)WFDC5
Genetics Home Reference (NIH)WFDC5
Genomic and cartography
GoldenPath hg38 (UCSC)WFDC5  -     chr20:45109452-45115172 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WFDC5  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblWFDC5 - 20q13.12 [CytoView hg19]  WFDC5 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIWFDC5 [Mapview hg19]  WFDC5 [Mapview hg38]
OMIM605161   
Gene and transcription
Genbank (Entrez)AY038181 AY358822 BC039173 HQ447949
RefSeq transcript (Entrez)NM_145652
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WFDC5
Cluster EST : UnigeneHs.375031 [ NCBI ]
CGAP (NCI)Hs.375031
Alternative Splicing GalleryENSG00000175121
Gene ExpressionWFDC5 [ NCBI-GEO ]   WFDC5 [ EBI - ARRAY_EXPRESS ]   WFDC5 [ SEEK ]   WFDC5 [ MEM ]
Gene Expression Viewer (FireBrowse)WFDC5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149708
GTEX Portal (Tissue expression)WFDC5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TCV5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TCV5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TCV5
Splice isoforms : SwissVarQ8TCV5
PhosPhoSitePlusQ8TCV5
Domaine pattern : Prosite (Expaxy)WAP (PS51390)   
Domains : Interpro (EBI)WAP_dom    WFDC5   
Domain families : Pfam (Sanger)WAP (PF00095)   
Domain families : Pfam (NCBI)pfam00095   
Domain families : Smart (EMBL)WAP (SM00217)  
Conserved Domain (NCBI)WFDC5
DMDM Disease mutations149708
Blocks (Seattle)WFDC5
SuperfamilyQ8TCV5
Human Protein AtlasENSG00000175121
Peptide AtlasQ8TCV5
IPIIPI00152461   IPI00221015   
Protein Interaction databases
DIP (DOE-UCLA)Q8TCV5
IntAct (EBI)Q8TCV5
FunCoupENSG00000175121
BioGRIDWFDC5
STRING (EMBL)WFDC5
ZODIACWFDC5
Ontologies - Pathways
QuickGOQ8TCV5
Ontology : AmiGOserine-type endopeptidase inhibitor activity  extracellular region  negative regulation of endopeptidase activity  
Ontology : EGO-EBIserine-type endopeptidase inhibitor activity  extracellular region  negative regulation of endopeptidase activity  
NDEx NetworkWFDC5
Atlas of Cancer Signalling NetworkWFDC5
Wikipedia pathwaysWFDC5
Orthology - Evolution
OrthoDB149708
GeneTree (enSembl)ENSG00000175121
Phylogenetic Trees/Animal Genes : TreeFamWFDC5
HOVERGENQ8TCV5
HOGENOMQ8TCV5
Homologs : HomoloGeneWFDC5
Homology/Alignments : Family Browser (UCSC)WFDC5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWFDC5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WFDC5
dbVarWFDC5
ClinVarWFDC5
1000_GenomesWFDC5 
Exome Variant ServerWFDC5
ExAC (Exome Aggregation Consortium)WFDC5 (select the gene name)
Genetic variants : HAPMAP149708
Genomic Variants (DGV)WFDC5 [DGVbeta]
DECIPHERWFDC5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWFDC5 
Mutations
ICGC Data PortalWFDC5 
TCGA Data PortalWFDC5 
Broad Tumor PortalWFDC5
OASIS PortalWFDC5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWFDC5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWFDC5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WFDC5
DgiDB (Drug Gene Interaction Database)WFDC5
DoCM (Curated mutations)WFDC5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WFDC5 (select a term)
intoGenWFDC5
Cancer3DWFDC5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605161   
Orphanet
MedgenWFDC5
Genetic Testing Registry WFDC5
NextProtQ8TCV5 [Medical]
TSGene149708
GENETestsWFDC5
Huge Navigator WFDC5 [HugePedia]
snp3D : Map Gene to Disease149708
BioCentury BCIQWFDC5
ClinGenWFDC5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149708
Chemical/Pharm GKB GenePA134885667
Clinical trialWFDC5
Miscellaneous
canSAR (ICR)WFDC5 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWFDC5
EVEXWFDC5
GoPubMedWFDC5
iHOPWFDC5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:44:08 CEST 2017

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