Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

WFDC6 (WAP four-disulfide core domain 6)

Identity

Alias_namesC20orf171
chromosome 20 open reading frame 171
Alias_symbol (synonym)dJ461P17.11
WAP6
Other aliasHEL-S-295
HGNC (Hugo) WFDC6
LocusID (NCBI) 140870
Atlas_Id 75754
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 45534197 and ends at 45539495 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WFDC6   16164
Cards
Entrez_Gene (NCBI)WFDC6  140870  WAP four-disulfide core domain 6
AliasesC20orf171; HEL-S-295; WAP6; dJ461P17.11
GeneCards (Weizmann)WFDC6
Ensembl hg19 (Hinxton)ENSG00000243543 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000243543 [Gene_View]  chr20:45534197-45539495 [Contig_View]  WFDC6 [Vega]
ICGC DataPortalENSG00000243543
TCGA cBioPortalWFDC6
AceView (NCBI)WFDC6
Genatlas (Paris)WFDC6
WikiGenes140870
SOURCE (Princeton)WFDC6
Genetics Home Reference (NIH)WFDC6
Genomic and cartography
GoldenPath hg38 (UCSC)WFDC6  -     chr20:45534197-45539495 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WFDC6  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblWFDC6 - 20q13.12 [CytoView hg19]  WFDC6 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIWFDC6 [Mapview hg19]  WFDC6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF411861 BC101600 BC101604 GQ472217
RefSeq transcript (Entrez)NM_080827
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WFDC6
Cluster EST : UnigeneHs.673237 [ NCBI ]
CGAP (NCI)Hs.673237
Alternative Splicing GalleryENSG00000243543
Gene ExpressionWFDC6 [ NCBI-GEO ]   WFDC6 [ EBI - ARRAY_EXPRESS ]   WFDC6 [ SEEK ]   WFDC6 [ MEM ]
Gene Expression Viewer (FireBrowse)WFDC6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140870
GTEX Portal (Tissue expression)WFDC6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQY6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQY6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQY6
Splice isoforms : SwissVarQ9BQY6
PhosPhoSitePlusQ9BQY6
Domaine pattern : Prosite (Expaxy)BPTI_KUNITZ_2 (PS50279)    WAP (PS51390)   
Domains : Interpro (EBI)Kunitz_BPTI    WAP_dom   
Domain families : Pfam (Sanger)Kunitz_BPTI (PF00014)   
Domain families : Pfam (NCBI)pfam00014   
Domain families : Smart (EMBL)KU (SM00131)  
Conserved Domain (NCBI)WFDC6
DMDM Disease mutations140870
Blocks (Seattle)WFDC6
SuperfamilyQ9BQY6
Human Protein AtlasENSG00000243543
Peptide AtlasQ9BQY6
HPRD15677
IPIIPI00184996   IPI00028783   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQY6
IntAct (EBI)Q9BQY6
FunCoupENSG00000243543
BioGRIDWFDC6
STRING (EMBL)WFDC6
ZODIACWFDC6
Ontologies - Pathways
QuickGOQ9BQY6
Ontology : AmiGOserine-type endopeptidase inhibitor activity  extracellular region  negative regulation of endopeptidase activity  
Ontology : EGO-EBIserine-type endopeptidase inhibitor activity  extracellular region  negative regulation of endopeptidase activity  
NDEx NetworkWFDC6
Atlas of Cancer Signalling NetworkWFDC6
Wikipedia pathwaysWFDC6
Orthology - Evolution
OrthoDB140870
GeneTree (enSembl)ENSG00000243543
Phylogenetic Trees/Animal Genes : TreeFamWFDC6
HOVERGENQ9BQY6
HOGENOMQ9BQY6
Homologs : HomoloGeneWFDC6
Homology/Alignments : Family Browser (UCSC)WFDC6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWFDC6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WFDC6
dbVarWFDC6
ClinVarWFDC6
1000_GenomesWFDC6 
Exome Variant ServerWFDC6
ExAC (Exome Aggregation Consortium)WFDC6 (select the gene name)
Genetic variants : HAPMAP140870
Genomic Variants (DGV)WFDC6 [DGVbeta]
DECIPHERWFDC6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWFDC6 
Mutations
ICGC Data PortalWFDC6 
TCGA Data PortalWFDC6 
Broad Tumor PortalWFDC6
OASIS PortalWFDC6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWFDC6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWFDC6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WFDC6
DgiDB (Drug Gene Interaction Database)WFDC6
DoCM (Curated mutations)WFDC6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WFDC6 (select a term)
intoGenWFDC6
Cancer3DWFDC6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWFDC6
Genetic Testing Registry WFDC6
NextProtQ9BQY6 [Medical]
TSGene140870
GENETestsWFDC6
Target ValidationWFDC6
Huge Navigator WFDC6 [HugePedia]
snp3D : Map Gene to Disease140870
BioCentury BCIQWFDC6
ClinGenWFDC6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140870
Chemical/Pharm GKB GenePA25714
Clinical trialWFDC6
Miscellaneous
canSAR (ICR)WFDC6 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWFDC6
EVEXWFDC6
GoPubMedWFDC6
iHOPWFDC6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:49:04 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.