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WFDC9 (WAP four-disulfide core domain 9)

Identity

Alias_symbol (synonym)WAP9
dJ688G8.2
Other alias
HGNC (Hugo) WFDC9
LocusID (NCBI) 259240
Atlas_Id 75756
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 45607939 and ends at 45631268 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WFDC9   20380
Cards
Entrez_Gene (NCBI)WFDC9  259240  WAP four-disulfide core domain 9
AliasesWAP9; dJ688G8.2
GeneCards (Weizmann)WFDC9
Ensembl hg19 (Hinxton)ENSG00000180205 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180205 [Gene_View]  chr20:45607939-45631268 [Contig_View]  WFDC9 [Vega]
ICGC DataPortalENSG00000180205
TCGA cBioPortalWFDC9
AceView (NCBI)WFDC9
Genatlas (Paris)WFDC9
WikiGenes259240
SOURCE (Princeton)WFDC9
Genetics Home Reference (NIH)WFDC9
Genomic and cartography
GoldenPath hg38 (UCSC)WFDC9  -     chr20:45607939-45631268 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WFDC9  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblWFDC9 - 20q13.12 [CytoView hg19]  WFDC9 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIWFDC9 [Mapview hg19]  WFDC9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW269752 AY047610 BC069295 BC101652 BC101656
RefSeq transcript (Entrez)NM_147198
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WFDC9
Cluster EST : UnigeneHs.249828 [ NCBI ]
CGAP (NCI)Hs.249828
Alternative Splicing GalleryENSG00000180205
Gene ExpressionWFDC9 [ NCBI-GEO ]   WFDC9 [ EBI - ARRAY_EXPRESS ]   WFDC9 [ SEEK ]   WFDC9 [ MEM ]
Gene Expression Viewer (FireBrowse)WFDC9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)259240
GTEX Portal (Tissue expression)WFDC9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEX5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEX5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEX5
Splice isoforms : SwissVarQ8NEX5
PhosPhoSitePlusQ8NEX5
Domains : Interpro (EBI)WFDC9    WFDC9/WFDC11   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain structure : Prodom (Prabi Lyon)WFDC9_WDFC11 (PD288743)   
Conserved Domain (NCBI)WFDC9
DMDM Disease mutations259240
Blocks (Seattle)WFDC9
SuperfamilyQ8NEX5
Human Protein AtlasENSG00000180205
Peptide AtlasQ8NEX5
HPRD15678
IPIIPI00168790   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEX5
IntAct (EBI)Q8NEX5
FunCoupENSG00000180205
BioGRIDWFDC9
STRING (EMBL)WFDC9
ZODIACWFDC9
Ontologies - Pathways
QuickGOQ8NEX5
Ontology : AmiGOprotein binding  extracellular region  
Ontology : EGO-EBIprotein binding  extracellular region  
NDEx NetworkWFDC9
Atlas of Cancer Signalling NetworkWFDC9
Wikipedia pathwaysWFDC9
Orthology - Evolution
OrthoDB259240
GeneTree (enSembl)ENSG00000180205
Phylogenetic Trees/Animal Genes : TreeFamWFDC9
HOVERGENQ8NEX5
HOGENOMQ8NEX5
Homologs : HomoloGeneWFDC9
Homology/Alignments : Family Browser (UCSC)WFDC9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWFDC9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WFDC9
dbVarWFDC9
ClinVarWFDC9
1000_GenomesWFDC9 
Exome Variant ServerWFDC9
ExAC (Exome Aggregation Consortium)WFDC9 (select the gene name)
Genetic variants : HAPMAP259240
Genomic Variants (DGV)WFDC9 [DGVbeta]
DECIPHERWFDC9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWFDC9 
Mutations
ICGC Data PortalWFDC9 
TCGA Data PortalWFDC9 
Broad Tumor PortalWFDC9
OASIS PortalWFDC9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWFDC9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWFDC9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WFDC9
DgiDB (Drug Gene Interaction Database)WFDC9
DoCM (Curated mutations)WFDC9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WFDC9 (select a term)
intoGenWFDC9
Cancer3DWFDC9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWFDC9
Genetic Testing Registry WFDC9
NextProtQ8NEX5 [Medical]
TSGene259240
GENETestsWFDC9
Target ValidationWFDC9
Huge Navigator WFDC9 [HugePedia]
snp3D : Map Gene to Disease259240
BioCentury BCIQWFDC9
ClinGenWFDC9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD259240
Chemical/Pharm GKB GenePA134934414
Clinical trialWFDC9
Miscellaneous
canSAR (ICR)WFDC9 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWFDC9
EVEXWFDC9
GoPubMedWFDC9
iHOPWFDC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:05 CEST 2017

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