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WHAMM (WAS protein homolog associated with actin, golgi membranes and microtubules)

Identity

Alias_namesWHDC1
WAS protein homology region 2 domain containing 1
Alias_symbol (synonym)KIAA1971
WHAMM1
Other alias
HGNC (Hugo) WHAMM
LocusID (NCBI) 123720
Atlas_Id 75759
Location 15q25.2  [Link to chromosome band 15q25]
Location_base_pair Starts at 82809628 and ends at 82834861 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TPM4 (19p13.12) / WHAMM (15q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WHAMM   30493
Cards
Entrez_Gene (NCBI)WHAMM  123720  WAS protein homolog associated with actin, golgi membranes and microtubules
AliasesWHAMM1; WHDC1
GeneCards (Weizmann)WHAMM
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:82809628-82834861 [Contig_View]  WHAMM [Vega]
TCGA cBioPortalWHAMM
AceView (NCBI)WHAMM
Genatlas (Paris)WHAMM
WikiGenes123720
SOURCE (Princeton)WHAMM
Genetics Home Reference (NIH)WHAMM
Genomic and cartography
GoldenPath hg38 (UCSC)WHAMM  -     chr15:82809628-82834861 +  15q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WHAMM  -     15q25.2   [Description]    (hg19-Feb_2009)
EnsemblWHAMM - 15q25.2 [CytoView hg19]  WHAMM - 15q25.2 [CytoView hg38]
Mapping of homologs : NCBIWHAMM [Mapview hg19]  WHAMM [Mapview hg38]
OMIM612393   
Gene and transcription
Genbank (Entrez)AB075851 AI377476 AK097947 AK126887 BC167774
RefSeq transcript (Entrez)NM_001080435
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WHAMM
Cluster EST : UnigeneHs.377360 [ NCBI ]
CGAP (NCI)Hs.377360
Gene ExpressionWHAMM [ NCBI-GEO ]   WHAMM [ EBI - ARRAY_EXPRESS ]   WHAMM [ SEEK ]   WHAMM [ MEM ]
Gene Expression Viewer (FireBrowse)WHAMM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)123720
GTEX Portal (Tissue expression)WHAMM
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TF30   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TF30  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TF30
Splice isoforms : SwissVarQ8TF30
PhosPhoSitePlusQ8TF30
Domaine pattern : Prosite (Expaxy)WH2 (PS51082)   
Domains : Interpro (EBI)JMY/WHAMM    JMY/WHAMM_N    WH2_dom    WHAMM   
Domain families : Pfam (Sanger)JMY (PF15871)    WHAMM-JMY_N (PF15920)   
Domain families : Pfam (NCBI)pfam15871    pfam15920   
Conserved Domain (NCBI)WHAMM
DMDM Disease mutations123720
Blocks (Seattle)WHAMM
SuperfamilyQ8TF30
Peptide AtlasQ8TF30
IPIIPI00797568   IPI00152827   
Protein Interaction databases
DIP (DOE-UCLA)Q8TF30
IntAct (EBI)Q8TF30
BioGRIDWHAMM
STRING (EMBL)WHAMM
ZODIACWHAMM
Ontologies - Pathways
QuickGOQ8TF30
Ontology : AmiGOGolgi membrane  actin binding  endoplasmic reticulum-Golgi intermediate compartment  cytosol  microtubule  ER to Golgi vesicle-mediated transport  actin filament organization  cell cycle arrest  microtubule binding  GTP-Rho binding  lamellipodium assembly  cytoplasmic vesicle membrane  endoplasmic reticulum-Golgi intermediate compartment membrane  Arp2/3 complex-mediated actin nucleation  focal adhesion assembly  positive regulation of actin nucleation  Arp2/3 complex binding  actin filament reorganization  plasma membrane tubulation  
Ontology : EGO-EBIGolgi membrane  actin binding  endoplasmic reticulum-Golgi intermediate compartment  cytosol  microtubule  ER to Golgi vesicle-mediated transport  actin filament organization  cell cycle arrest  microtubule binding  GTP-Rho binding  lamellipodium assembly  cytoplasmic vesicle membrane  endoplasmic reticulum-Golgi intermediate compartment membrane  Arp2/3 complex-mediated actin nucleation  focal adhesion assembly  positive regulation of actin nucleation  Arp2/3 complex binding  actin filament reorganization  plasma membrane tubulation  
NDEx NetworkWHAMM
Atlas of Cancer Signalling NetworkWHAMM
Wikipedia pathwaysWHAMM
Orthology - Evolution
OrthoDB123720
Phylogenetic Trees/Animal Genes : TreeFamWHAMM
HOVERGENQ8TF30
HOGENOMQ8TF30
Homologs : HomoloGeneWHAMM
Homology/Alignments : Family Browser (UCSC)WHAMM
Gene fusions - Rearrangements
Tumor Fusion PortalWHAMM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWHAMM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WHAMM
dbVarWHAMM
ClinVarWHAMM
1000_GenomesWHAMM 
Exome Variant ServerWHAMM
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP123720
Genomic Variants (DGV)WHAMM [DGVbeta]
DECIPHERWHAMM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWHAMM 
Mutations
ICGC Data PortalWHAMM 
TCGA Data PortalWHAMM 
Broad Tumor PortalWHAMM
OASIS PortalWHAMM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWHAMM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWHAMM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WHAMM
DgiDB (Drug Gene Interaction Database)WHAMM
DoCM (Curated mutations)WHAMM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WHAMM (select a term)
intoGenWHAMM
Cancer3DWHAMM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612393   
Orphanet
DisGeNETWHAMM
MedgenWHAMM
Genetic Testing Registry WHAMM
NextProtQ8TF30 [Medical]
TSGene123720
GENETestsWHAMM
Target ValidationWHAMM
Huge Navigator WHAMM [HugePedia]
snp3D : Map Gene to Disease123720
BioCentury BCIQWHAMM
ClinGenWHAMM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD123720
Chemical/Pharm GKB GenePA164727567
Clinical trialWHAMM
Miscellaneous
canSAR (ICR)WHAMM (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWHAMM
EVEXWHAMM
GoPubMedWHAMM
iHOPWHAMM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:21:48 CET 2017

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