Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

WIPF3 (WAS/WASL interacting protein family, member 3)

Identity

Alias_namesWAS/WASL interacting protein family, member 3
Alias_symbol (synonym)CR16
FLJ36931
Other alias
HGNC (Hugo) WIPF3
LocusID (NCBI) 644150
Atlas_Id 75764
Location 7p14.3  [Link to chromosome band 7p14]
Location_base_pair Starts at 29846170 and ends at 29956682 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SSBP2 (5q14.1) / WIPF3 (7p14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WIPF3   22004
Cards
Entrez_Gene (NCBI)WIPF3  644150  WAS/WASL interacting protein family, member 3
AliasesCR16
GeneCards (Weizmann)WIPF3
Ensembl hg19 (Hinxton)ENSG00000122574 [Gene_View]  chr7:29846170-29956682 [Contig_View]  WIPF3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000122574 [Gene_View]  chr7:29846170-29956682 [Contig_View]  WIPF3 [Vega]
ICGC DataPortalENSG00000122574
TCGA cBioPortalWIPF3
AceView (NCBI)WIPF3
Genatlas (Paris)WIPF3
WikiGenes644150
SOURCE (Princeton)WIPF3
Genetics Home Reference (NIH)WIPF3
Genomic and cartography
GoldenPath hg19 (UCSC)WIPF3  -     chr7:29846170-29956682 +  7p14.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)WIPF3  -     7p14.3   [Description]    (hg38-Dec_2013)
EnsemblWIPF3 - 7p14.3 [CytoView hg19]  WIPF3 - 7p14.3 [CytoView hg38]
Mapping of homologs : NCBIWIPF3 [Mapview hg19]  WIPF3 [Mapview hg38]
OMIM612432   
Gene and transcription
Genbank (Entrez)AK094250 AW105171 BC156551 BX107905
RefSeq transcript (Entrez)NM_001080529
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)WIPF3
Cluster EST : UnigeneHs.380698 [ NCBI ]
CGAP (NCI)Hs.380698
Alternative Splicing GalleryENSG00000122574
Gene ExpressionWIPF3 [ NCBI-GEO ]   WIPF3 [ EBI - ARRAY_EXPRESS ]   WIPF3 [ SEEK ]   WIPF3 [ MEM ]
Gene Expression Viewer (FireBrowse)WIPF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)644150
GTEX Portal (Tissue expression)WIPF3
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NGB9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NGB9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NGB9
Splice isoforms : SwissVarA6NGB9
PhosPhoSitePlusA6NGB9
Domaine pattern : Prosite (Expaxy)WH2 (PS51082)   
Domains : Interpro (EBI)WH2_dom   
Domain families : Pfam (Sanger)WH2 (PF02205)   
Domain families : Pfam (NCBI)pfam02205   
Domain families : Smart (EMBL)WH2 (SM00246)  
Conserved Domain (NCBI)WIPF3
DMDM Disease mutations644150
Blocks (Seattle)WIPF3
SuperfamilyA6NGB9
Human Protein AtlasENSG00000122574
Peptide AtlasA6NGB9
IPIIPI00032939   IPI00916367   
Protein Interaction databases
DIP (DOE-UCLA)A6NGB9
IntAct (EBI)A6NGB9
FunCoupENSG00000122574
BioGRIDWIPF3
STRING (EMBL)WIPF3
ZODIACWIPF3
Ontologies - Pathways
QuickGOA6NGB9
Ontology : AmiGOactin binding  cytosol  small GTPase mediated signal transduction  multicellular organismal development  spermatogenesis  SH3 domain binding  cell differentiation  Fc-gamma receptor signaling pathway involved in phagocytosis  innate immune response  
Ontology : EGO-EBIactin binding  cytosol  small GTPase mediated signal transduction  multicellular organismal development  spermatogenesis  SH3 domain binding  cell differentiation  Fc-gamma receptor signaling pathway involved in phagocytosis  innate immune response  
NDEx NetworkWIPF3
Atlas of Cancer Signalling NetworkWIPF3
Wikipedia pathwaysWIPF3
Orthology - Evolution
OrthoDB644150
GeneTree (enSembl)ENSG00000122574
Phylogenetic Trees/Animal Genes : TreeFamWIPF3
HOVERGENA6NGB9
HOGENOMA6NGB9
Homologs : HomoloGeneWIPF3
Homology/Alignments : Family Browser (UCSC)WIPF3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWIPF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WIPF3
dbVarWIPF3
ClinVarWIPF3
1000_GenomesWIPF3 
Exome Variant ServerWIPF3
ExAC (Exome Aggregation Consortium)WIPF3 (select the gene name)
Genetic variants : HAPMAP644150
Genomic Variants (DGV)WIPF3 [DGVbeta]
DECIPHER (Syndromes)7:29846170-29956682  ENSG00000122574
CONAN: Copy Number AnalysisWIPF3 
Mutations
ICGC Data PortalWIPF3 
TCGA Data PortalWIPF3 
Broad Tumor PortalWIPF3
OASIS PortalWIPF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWIPF3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWIPF3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WIPF3
DgiDB (Drug Gene Interaction Database)WIPF3
DoCM (Curated mutations)WIPF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WIPF3 (select a term)
intoGenWIPF3
Cancer3DWIPF3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612432   
Orphanet
MedgenWIPF3
Genetic Testing Registry WIPF3
NextProtA6NGB9 [Medical]
TSGene644150
GENETestsWIPF3
Huge Navigator WIPF3 [HugePedia]
snp3D : Map Gene to Disease644150
BioCentury BCIQWIPF3
ClinGenWIPF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD644150
Chemical/Pharm GKB GenePA162409231
Clinical trialWIPF3
Miscellaneous
canSAR (ICR)WIPF3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWIPF3
EVEXWIPF3
GoPubMedWIPF3
iHOPWIPF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:51:46 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.