Atlas of Genetics and Cytogenetics in Oncology and Haematology


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WNT10A (Wnt family member 10A)

Identity

Alias_nameswingless-type MMTV integration site family, member 10A
Other aliasOODD
SSPS
STHAG4
HGNC (Hugo) WNT10A
LocusID (NCBI) 80326
Atlas_Id 42816
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 218880533 and ends at 218893929 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Cancer prone implicated (Data extracted from papers in the Atlas) [ 1 ]
  Schöpf-Schulz-Passarge syndrome (SSPS)


External links

Nomenclature
HGNC (Hugo)WNT10A   13829
Cards
Entrez_Gene (NCBI)WNT10A  80326  Wnt family member 10A
AliasesOODD; SSPS; STHAG4
GeneCards (Weizmann)WNT10A
Ensembl hg19 (Hinxton)ENSG00000135925 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135925 [Gene_View]  ENSG00000135925 [Sequence]  chr2:218880533-218893929 [Contig_View]  WNT10A [Vega]
ICGC DataPortalENSG00000135925
TCGA cBioPortalWNT10A
AceView (NCBI)WNT10A
Genatlas (Paris)WNT10A
WikiGenes80326
SOURCE (Princeton)WNT10A
Genetics Home Reference (NIH)WNT10A
Genomic and cartography
GoldenPath hg38 (UCSC)WNT10A  -     chr2:218880533-218893929 +  2q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WNT10A  -     2q35   [Description]    (hg19-Feb_2009)
GoldenPathWNT10A - 2q35 [CytoView hg19]  WNT10A - 2q35 [CytoView hg38]
ImmunoBaseENSG00000135925
Mapping of homologs : NCBIWNT10A [Mapview hg19]  WNT10A [Mapview hg38]
OMIM150400   224750   257980   606268   
Gene and transcription
Genbank (Entrez)AB059569 AK024363 AK315081 AY009400 BC003544
RefSeq transcript (Entrez)NM_025216
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WNT10A
Alternative Splicing GalleryENSG00000135925
Gene ExpressionWNT10A [ NCBI-GEO ]   WNT10A [ EBI - ARRAY_EXPRESS ]   WNT10A [ SEEK ]   WNT10A [ MEM ]
Gene Expression Viewer (FireBrowse)WNT10A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)80326
GTEX Portal (Tissue expression)WNT10A
Human Protein AtlasENSG00000135925-WNT10A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)WNT10A
DMDM Disease mutations80326
Blocks (Seattle)WNT10A
Human Protein Atlas [tissue]ENSG00000135925-WNT10A [tissue]
HPRD16207
IPIIPI00026370   IPI00926562   
Protein Interaction databases
FunCoupENSG00000135925
BioGRIDWNT10A
STRING (EMBL)WNT10A
ZODIACWNT10A
Ontologies - Pathways
Huge Navigator WNT10A [HugePedia]
snp3D : Map Gene to Disease80326
BioCentury BCIQWNT10A
ClinGenWNT10A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80326
Chemical/Pharm GKB GenePA37817
Clinical trialWNT10A
Miscellaneous
canSAR (ICR)WNT10A (select the gene name)
DataMed IndexWNT10A
Probes
Litterature
PubMed66 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWNT10A
EVEXWNT10A
GoPubMedWNT10A
iHOPWNT10A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:16:40 CET 2020

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