Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

WNT10A (Wnt family member 10A)

Identity

Alias_nameswingless-type MMTV integration site family
Other aliasOODD
SSPS
STHAG4
HGNC (Hugo) WNT10A
LocusID (NCBI) 80326
Atlas_Id 42816
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 219745255 and ends at 219758651 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Cancer prone implicated (Data extracted from papers in the Atlas) [ 1 ]
  Schöpf-Schulz-Passarge syndrome (SSPS)


External links

Nomenclature
HGNC (Hugo)WNT10A   13829
Cards
Entrez_Gene (NCBI)WNT10A  80326  Wnt family member 10A
AliasesOODD; SSPS; STHAG4
GeneCards (Weizmann)WNT10A
Ensembl hg19 (Hinxton)ENSG00000135925 [Gene_View]  chr2:219745255-219758651 [Contig_View]  WNT10A [Vega]
Ensembl hg38 (Hinxton)ENSG00000135925 [Gene_View]  chr2:219745255-219758651 [Contig_View]  WNT10A [Vega]
ICGC DataPortalENSG00000135925
TCGA cBioPortalWNT10A
AceView (NCBI)WNT10A
Genatlas (Paris)WNT10A
WikiGenes80326
SOURCE (Princeton)WNT10A
Genetics Home Reference (NIH)WNT10A
Genomic and cartography
GoldenPath hg19 (UCSC)WNT10A  -     chr2:219745255-219758651 +  2q35   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)WNT10A  -     2q35   [Description]    (hg38-Dec_2013)
EnsemblWNT10A - 2q35 [CytoView hg19]  WNT10A - 2q35 [CytoView hg38]
Mapping of homologs : NCBIWNT10A [Mapview hg19]  WNT10A [Mapview hg38]
OMIM150400   224750   257980   606268   
Gene and transcription
Genbank (Entrez)AB059569 AK024363 AK315081 AY009400 BC003544
RefSeq transcript (Entrez)NM_025216
RefSeq genomic (Entrez)NC_000002 NC_018913 NG_012179 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)WNT10A
Cluster EST : UnigeneHs.121540 [ NCBI ]
CGAP (NCI)Hs.121540
Alternative Splicing GalleryENSG00000135925
Gene ExpressionWNT10A [ NCBI-GEO ]   WNT10A [ EBI - ARRAY_EXPRESS ]   WNT10A [ SEEK ]   WNT10A [ MEM ]
Gene Expression Viewer (FireBrowse)WNT10A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80326
GTEX Portal (Tissue expression)WNT10A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZT5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZT5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZT5
Splice isoforms : SwissVarQ9GZT5
PhosPhoSitePlusQ9GZT5
Domaine pattern : Prosite (Expaxy)WNT1 (PS00246)   
Domains : Interpro (EBI)Wnt    Wnt10    Wnt_CS   
Domain families : Pfam (Sanger)wnt (PF00110)   
Domain families : Pfam (NCBI)pfam00110   
Domain families : Smart (EMBL)WNT1 (SM00097)  
Conserved Domain (NCBI)WNT10A
DMDM Disease mutations80326
Blocks (Seattle)WNT10A
SuperfamilyQ9GZT5
Human Protein AtlasENSG00000135925
Peptide AtlasQ9GZT5
HPRD16207
IPIIPI00026370   IPI00926562   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZT5
IntAct (EBI)Q9GZT5
FunCoupENSG00000135925
BioGRIDWNT10A
STRING (EMBL)WNT10A
ZODIACWNT10A
Ontologies - Pathways
QuickGOQ9GZT5
Ontology : AmiGOhair follicle development  frizzled binding  extracellular region  proteinaceous extracellular matrix  extracellular space  positive regulation of gene expression  neural crest cell differentiation  Wnt signaling pathway  Wnt signaling pathway  neuron differentiation  hair follicle morphogenesis  odontogenesis  regulation of odontogenesis of dentin-containing tooth  tongue development  skin development  cell fate commitment  epidermis morphogenesis  sebaceous gland development  cellular response to transforming growth factor beta stimulus  
Ontology : EGO-EBIhair follicle development  frizzled binding  extracellular region  proteinaceous extracellular matrix  extracellular space  positive regulation of gene expression  neural crest cell differentiation  Wnt signaling pathway  Wnt signaling pathway  neuron differentiation  hair follicle morphogenesis  odontogenesis  regulation of odontogenesis of dentin-containing tooth  tongue development  skin development  cell fate commitment  epidermis morphogenesis  sebaceous gland development  cellular response to transforming growth factor beta stimulus  
Pathways : KEGGWnt signaling pathway    Hedgehog signaling pathway    Hippo signaling pathway    Melanogenesis    HTLV-I infection    Pathways in cancer    Proteoglycans in cancer    Basal cell carcinoma   
NDEx NetworkWNT10A
Atlas of Cancer Signalling NetworkWNT10A
Wikipedia pathwaysWNT10A
Orthology - Evolution
OrthoDB80326
GeneTree (enSembl)ENSG00000135925
Phylogenetic Trees/Animal Genes : TreeFamWNT10A
HOVERGENQ9GZT5
HOGENOMQ9GZT5
Homologs : HomoloGeneWNT10A
Homology/Alignments : Family Browser (UCSC)WNT10A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWNT10A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WNT10A
dbVarWNT10A
ClinVarWNT10A
1000_GenomesWNT10A 
Exome Variant ServerWNT10A
ExAC (Exome Aggregation Consortium)WNT10A (select the gene name)
Genetic variants : HAPMAP80326
Genomic Variants (DGV)WNT10A [DGVbeta]
DECIPHER (Syndromes)2:219745255-219758651  ENSG00000135925
CONAN: Copy Number AnalysisWNT10A 
Mutations
ICGC Data PortalWNT10A 
TCGA Data PortalWNT10A 
Broad Tumor PortalWNT10A
OASIS PortalWNT10A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWNT10A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWNT10A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WNT10A
DgiDB (Drug Gene Interaction Database)WNT10A
DoCM (Curated mutations)WNT10A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WNT10A (select a term)
intoGenWNT10A
Cancer3DWNT10A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM150400    224750    257980    606268   
Orphanet2482    7026    10664    14371   
MedgenWNT10A
Genetic Testing Registry WNT10A
NextProtQ9GZT5 [Medical]
TSGene80326
GENETestsWNT10A
Huge Navigator WNT10A [HugePedia]
snp3D : Map Gene to Disease80326
BioCentury BCIQWNT10A
ClinGenWNT10A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80326
Chemical/Pharm GKB GenePA37817
Clinical trialWNT10A
Miscellaneous
canSAR (ICR)WNT10A (select the gene name)
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWNT10A
EVEXWNT10A
GoPubMedWNT10A
iHOPWNT10A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:25:04 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.