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WNT16 (Wnt family member 16)

Identity

Alias_nameswingless-type MMTV integration site family
Other alias-
HGNC (Hugo) WNT16
LocusID (NCBI) 51384
Atlas_Id 42819
Location 7q31.31  [Link to chromosome band 7q31]
Location_base_pair Starts at 121325367 and ends at 121341104 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WNT16   16267
Cards
Entrez_Gene (NCBI)WNT16  51384  Wnt family member 16
Aliases
GeneCards (Weizmann)WNT16
Ensembl hg19 (Hinxton)ENSG00000002745 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000002745 [Gene_View]  chr7:121325367-121341104 [Contig_View]  WNT16 [Vega]
ICGC DataPortalENSG00000002745
TCGA cBioPortalWNT16
AceView (NCBI)WNT16
Genatlas (Paris)WNT16
WikiGenes51384
SOURCE (Princeton)WNT16
Genetics Home Reference (NIH)WNT16
Genomic and cartography
GoldenPath hg38 (UCSC)WNT16  -     chr7:121325367-121341104 +  7q31.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WNT16  -     7q31.31   [Description]    (hg19-Feb_2009)
EnsemblWNT16 - 7q31.31 [CytoView hg19]  WNT16 - 7q31.31 [CytoView hg38]
Mapping of homologs : NCBIWNT16 [Mapview hg19]  WNT16 [Mapview hg38]
OMIM606267   
Gene and transcription
Genbank (Entrez)AF152584 AF169963 BC104919 BC104945 EU190890
RefSeq transcript (Entrez)NM_016087 NM_057168
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WNT16
Cluster EST : UnigeneHs.272375 [ NCBI ]
CGAP (NCI)Hs.272375
Alternative Splicing GalleryENSG00000002745
Gene ExpressionWNT16 [ NCBI-GEO ]   WNT16 [ EBI - ARRAY_EXPRESS ]   WNT16 [ SEEK ]   WNT16 [ MEM ]
Gene Expression Viewer (FireBrowse)WNT16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51384
GTEX Portal (Tissue expression)WNT16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBV4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBV4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBV4
Splice isoforms : SwissVarQ9UBV4
PhosPhoSitePlusQ9UBV4
Domaine pattern : Prosite (Expaxy)WNT1 (PS00246)   
Domains : Interpro (EBI)Wnt    Wnt16    Wnt_CS   
Domain families : Pfam (Sanger)wnt (PF00110)   
Domain families : Pfam (NCBI)pfam00110   
Domain families : Smart (EMBL)WNT1 (SM00097)  
Conserved Domain (NCBI)WNT16
DMDM Disease mutations51384
Blocks (Seattle)WNT16
SuperfamilyQ9UBV4
Human Protein AtlasENSG00000002745
Peptide AtlasQ9UBV4
HPRD05882
IPIIPI00002791   IPI00216310   IPI01012183   IPI01008820   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBV4
IntAct (EBI)Q9UBV4
FunCoupENSG00000002745
BioGRIDWNT16
STRING (EMBL)WNT16
ZODIACWNT16
Ontologies - Pathways
QuickGOQ9UBV4
Ontology : AmiGOoptic cup formation involved in camera-type eye development  frizzled binding  extracellular region  proteinaceous extracellular matrix  extracellular space  cytoplasm  positive regulation of gene expression  positive regulation of phosphatidylinositol 3-kinase signaling  Wnt signaling pathway  Wnt signaling pathway  neuron differentiation  keratinocyte differentiation  keratinocyte proliferation  cell fate commitment  positive regulation of JNK cascade  bone remodeling  cardiac epithelial to mesenchymal transition  negative regulation of cell death  replicative senescence  oxidative stress-induced premature senescence  
Ontology : EGO-EBIoptic cup formation involved in camera-type eye development  frizzled binding  extracellular region  proteinaceous extracellular matrix  extracellular space  cytoplasm  positive regulation of gene expression  positive regulation of phosphatidylinositol 3-kinase signaling  Wnt signaling pathway  Wnt signaling pathway  neuron differentiation  keratinocyte differentiation  keratinocyte proliferation  cell fate commitment  positive regulation of JNK cascade  bone remodeling  cardiac epithelial to mesenchymal transition  negative regulation of cell death  replicative senescence  oxidative stress-induced premature senescence  
Pathways : KEGG   
NDEx NetworkWNT16
Atlas of Cancer Signalling NetworkWNT16
Wikipedia pathwaysWNT16
Orthology - Evolution
OrthoDB51384
GeneTree (enSembl)ENSG00000002745
Phylogenetic Trees/Animal Genes : TreeFamWNT16
HOVERGENQ9UBV4
HOGENOMQ9UBV4
Homologs : HomoloGeneWNT16
Homology/Alignments : Family Browser (UCSC)WNT16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWNT16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WNT16
dbVarWNT16
ClinVarWNT16
1000_GenomesWNT16 
Exome Variant ServerWNT16
ExAC (Exome Aggregation Consortium)WNT16 (select the gene name)
Genetic variants : HAPMAP51384
Genomic Variants (DGV)WNT16 [DGVbeta]
DECIPHERWNT16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWNT16 
Mutations
ICGC Data PortalWNT16 
TCGA Data PortalWNT16 
Broad Tumor PortalWNT16
OASIS PortalWNT16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWNT16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWNT16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WNT16
DgiDB (Drug Gene Interaction Database)WNT16
DoCM (Curated mutations)WNT16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WNT16 (select a term)
intoGenWNT16
Cancer3DWNT16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606267   
Orphanet
MedgenWNT16
Genetic Testing Registry WNT16
NextProtQ9UBV4 [Medical]
TSGene51384
GENETestsWNT16
Huge Navigator WNT16 [HugePedia]
snp3D : Map Gene to Disease51384
BioCentury BCIQWNT16
ClinGenWNT16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51384
Chemical/Pharm GKB GenePA38105
Clinical trialWNT16
Miscellaneous
canSAR (ICR)WNT16 (select the gene name)
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWNT16
EVEXWNT16
GoPubMedWNT16
iHOPWNT16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:44:12 CEST 2017

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