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WNT2B (Wnt family member 2B)

Identity

Alias_namesWNT13
wingless-type MMTV integration site family
Alias_symbol (synonym)XWNT2
Other alias
HGNC (Hugo) WNT2B
LocusID (NCBI) 7482
Atlas_Id 42821
Location 1p13.2  [Link to chromosome band 1p13]
Location_base_pair Starts at 112466541 and ends at 112521288 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WNT2B   12781
Cards
Entrez_Gene (NCBI)WNT2B  7482  Wnt family member 2B
AliasesWNT13
GeneCards (Weizmann)WNT2B
Ensembl hg19 (Hinxton)ENSG00000134245 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134245 [Gene_View]  chr1:112466541-112521288 [Contig_View]  WNT2B [Vega]
ICGC DataPortalENSG00000134245
TCGA cBioPortalWNT2B
AceView (NCBI)WNT2B
Genatlas (Paris)WNT2B
WikiGenes7482
SOURCE (Princeton)WNT2B
Genetics Home Reference (NIH)WNT2B
Genomic and cartography
GoldenPath hg38 (UCSC)WNT2B  -     chr1:112466541-112521288 +  1p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WNT2B  -     1p13.2   [Description]    (hg19-Feb_2009)
EnsemblWNT2B - 1p13.2 [CytoView hg19]  WNT2B - 1p13.2 [CytoView hg38]
Mapping of homologs : NCBIWNT2B [Mapview hg19]  WNT2B [Mapview hg38]
OMIM601968   
Gene and transcription
Genbank (Entrez)AB045116 AB045117 AF028701 AK127449 AK307185
RefSeq transcript (Entrez)NM_001291880 NM_004185 NM_024494
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WNT2B
Cluster EST : UnigeneHs.258575 [ NCBI ]
CGAP (NCI)Hs.258575
Alternative Splicing GalleryENSG00000134245
Gene ExpressionWNT2B [ NCBI-GEO ]   WNT2B [ EBI - ARRAY_EXPRESS ]   WNT2B [ SEEK ]   WNT2B [ MEM ]
Gene Expression Viewer (FireBrowse)WNT2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7482
GTEX Portal (Tissue expression)WNT2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ93097   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ93097  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ93097
Splice isoforms : SwissVarQ93097
PhosPhoSitePlusQ93097
Domaine pattern : Prosite (Expaxy)WNT1 (PS00246)   
Domains : Interpro (EBI)Wnt    Wnt2    Wnt_CS   
Domain families : Pfam (Sanger)wnt (PF00110)   
Domain families : Pfam (NCBI)pfam00110   
Domain families : Smart (EMBL)WNT1 (SM00097)  
Conserved Domain (NCBI)WNT2B
DMDM Disease mutations7482
Blocks (Seattle)WNT2B
SuperfamilyQ93097
Human Protein AtlasENSG00000134245
Peptide AtlasQ93097
HPRD03574
IPIIPI00004121   IPI00215680   IPI00641877   
Protein Interaction databases
DIP (DOE-UCLA)Q93097
IntAct (EBI)Q93097
FunCoupENSG00000134245
BioGRIDWNT2B
STRING (EMBL)WNT2B
ZODIACWNT2B
Ontologies - Pathways
QuickGOQ93097
Ontology : AmiGOchondrocyte differentiation  lens development in camera-type eye  frizzled binding  extracellular region  proteinaceous extracellular matrix  extracellular space  extracellular space  male gonad development  cellular response to starvation  Wnt signaling pathway  Wnt signaling pathway  forebrain regionalization  neuron differentiation  neuron differentiation  intracellular membrane-bounded organelle  cell fate commitment  canonical Wnt signaling pathway  lung induction  mesenchymal-epithelial cell signaling  iris morphogenesis  cornea development in camera-type eye  hematopoietic stem cell proliferation  positive regulation of branching involved in ureteric bud morphogenesis  positive regulation of canonical Wnt signaling pathway  
Ontology : EGO-EBIchondrocyte differentiation  lens development in camera-type eye  frizzled binding  extracellular region  proteinaceous extracellular matrix  extracellular space  extracellular space  male gonad development  cellular response to starvation  Wnt signaling pathway  Wnt signaling pathway  forebrain regionalization  neuron differentiation  neuron differentiation  intracellular membrane-bounded organelle  cell fate commitment  canonical Wnt signaling pathway  lung induction  mesenchymal-epithelial cell signaling  iris morphogenesis  cornea development in camera-type eye  hematopoietic stem cell proliferation  positive regulation of branching involved in ureteric bud morphogenesis  positive regulation of canonical Wnt signaling pathway  
Pathways : KEGGWnt signaling pathway    Hedgehog signaling pathway    Hippo signaling pathway    Melanogenesis    HTLV-I infection    Pathways in cancer    Proteoglycans in cancer    Basal cell carcinoma   
NDEx NetworkWNT2B
Atlas of Cancer Signalling NetworkWNT2B
Wikipedia pathwaysWNT2B
Orthology - Evolution
OrthoDB7482
GeneTree (enSembl)ENSG00000134245
Phylogenetic Trees/Animal Genes : TreeFamWNT2B
HOVERGENQ93097
HOGENOMQ93097
Homologs : HomoloGeneWNT2B
Homology/Alignments : Family Browser (UCSC)WNT2B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWNT2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WNT2B
dbVarWNT2B
ClinVarWNT2B
1000_GenomesWNT2B 
Exome Variant ServerWNT2B
ExAC (Exome Aggregation Consortium)WNT2B (select the gene name)
Genetic variants : HAPMAP7482
Genomic Variants (DGV)WNT2B [DGVbeta]
DECIPHERWNT2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWNT2B 
Mutations
ICGC Data PortalWNT2B 
TCGA Data PortalWNT2B 
Broad Tumor PortalWNT2B
OASIS PortalWNT2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWNT2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWNT2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WNT2B
DgiDB (Drug Gene Interaction Database)WNT2B
DoCM (Curated mutations)WNT2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WNT2B (select a term)
intoGenWNT2B
Cancer3DWNT2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601968   
Orphanet
MedgenWNT2B
Genetic Testing Registry WNT2B
NextProtQ93097 [Medical]
TSGene7482
GENETestsWNT2B
Target ValidationWNT2B
Huge Navigator WNT2B [HugePedia]
snp3D : Map Gene to Disease7482
BioCentury BCIQWNT2B
ClinGenWNT2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7482
Chemical/Pharm GKB GenePA37382
Clinical trialWNT2B
Miscellaneous
canSAR (ICR)WNT2B (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWNT2B
EVEXWNT2B
GoPubMedWNT2B
iHOPWNT2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:02:55 CEST 2017

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