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WNT5B (wingless-type MMTV integration site family, member 5B)

Identity

Other names-
HGNC (Hugo) WNT5B
LocusID (NCBI) 81029
Location 12p13.33
Location_base_pair Starts at 1726222 and ends at 1756377 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)WNT5B   16265
Cards
Entrez_Gene (NCBI)WNT5B  81029  wingless-type MMTV integration site family, member 5B
GeneCards (Weizmann)WNT5B
Ensembl (Hinxton)ENSG00000111186 [Gene_View]  chr12:1726222-1756377 [Contig_View]  WNT5B [Vega]
AceView (NCBI)WNT5B
Genatlas (Paris)WNT5B
WikiGenes81029
SOURCE (Princeton)NM_030775 NM_032642
Genomic and cartography
GoldenPath (UCSC)WNT5B  -  12p13.33   chr12:1726222-1756377 +  12p13.33   [Description]    (hg19-Feb_2009)
EnsemblWNT5B - 12p13.33 [CytoView]
Mapping of homologs : NCBIWNT5B [Mapview]
OMIM606361   
Gene and transcription
Genbank (Entrez)AB060966 AB209228 AK290430 AY009399 BC001749
RefSeq transcript (Entrez)NM_030775 NM_032642
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_009759 NW_001838049 NW_004929382
Consensus coding sequences : CCDS (NCBI)WNT5B
Cluster EST : UnigeneHs.306051 [ NCBI ]
CGAP (NCI)Hs.306051
Alternative Splicing : Fast-db (Paris)GSHG0006371
Alternative Splicing GalleryENSG00000111186
Gene ExpressionWNT5B [ NCBI-GEO ]     WNT5B [ SEEK ]   WNT5B [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1J7 (Uniprot)
NextProtQ9H1J7  [Medical]
With graphics : InterProQ9H1J7
Splice isoforms : SwissVarQ9H1J7 (Swissvar)
Domaine pattern : Prosite (Expaxy)WNT1 (PS00246)   
Domains : Interpro (EBI)Wnt    Wnt5b    Wnt_CS   
Related proteins : CluSTrQ9H1J7
Domain families : Pfam (Sanger)wnt (PF00110)   
Domain families : Pfam (NCBI)pfam00110   
Domain families : Smart (EMBL)WNT1 (SM00097)  
DMDM Disease mutations81029
Blocks (Seattle)Q9H1J7
Human Protein AtlasENSG00000111186
Peptide AtlasQ9H1J7
HPRD05899
IPIIPI00022223   IPI01011558   IPI00747307   IPI01009461   IPI01016020   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1J7
IntAct (EBI)Q9H1J7
FunCoupENSG00000111186
BioGRIDWNT5B
InParanoidQ9H1J7
Interologous Interaction database Q9H1J7
IntegromeDBWNT5B
STRING (EMBL)WNT5B
Ontologies - Pathways
Ontology : AmiGOchondrocyte differentiation  receptor binding  frizzled binding  extracellular region  proteinaceous extracellular matrix  extracellular space  endoplasmic reticulum lumen  Golgi lumen  plasma membrane  cell surface  Wnt receptor signaling pathway  Wnt receptor signaling pathway  neuron differentiation  neuron differentiation  positive regulation of cell migration  cell fate commitment  fat cell differentiation  positive regulation of fat cell differentiation  lens fiber cell development  cellular response to retinoic acid  negative regulation of canonical Wnt receptor signaling pathway  
Ontology : EGO-EBIchondrocyte differentiation  receptor binding  frizzled binding  extracellular region  proteinaceous extracellular matrix  extracellular space  endoplasmic reticulum lumen  Golgi lumen  plasma membrane  cell surface  Wnt receptor signaling pathway  Wnt receptor signaling pathway  neuron differentiation  neuron differentiation  positive regulation of cell migration  cell fate commitment  fat cell differentiation  positive regulation of fat cell differentiation  lens fiber cell development  cellular response to retinoic acid  negative regulation of canonical Wnt receptor signaling pathway  
Pathways : KEGGWnt signaling pathway    Hedgehog signaling pathway    Hippo signaling pathway    Melanogenesis    HTLV-I infection    Pathways in cancer    Proteoglycans in cancer    Basal cell carcinoma   
REACTOMEWNT5B
Protein Interaction DatabaseWNT5B
Wikipedia pathwaysWNT5B
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)WNT5B
SNP (GeneSNP Utah)WNT5B
SNP : HGBaseWNT5B
Genetic variants : HAPMAPWNT5B
1000_GenomesWNT5B 
ICGC programENSG00000111186 
Somatic Mutations in Cancer : COSMICWNT5B 
CONAN: Copy Number AnalysisWNT5B 
Mutations and Diseases : HGMDWNT5B
OMIM606361   
GENETestsWNT5B
Disease Genetic AssociationWNT5B
Huge Navigator WNT5B [HugePedia]  WNT5B [HugeCancerGEM]
Genomic VariantsWNT5B  WNT5B [DGVbeta]
Exome VariantWNT5B
dbVarWNT5B
ClinVarWNT5B
snp3D : Map Gene to Disease81029
General knowledge
Homologs : HomoloGeneWNT5B
Homology/Alignments : Family Browser (UCSC)WNT5B
Phylogenetic Trees/Animal Genes : TreeFamWNT5B
Chemical/Protein Interactions : CTD81029
Chemical/Pharm GKB GenePA38104
Clinical trialWNT5B
Cancer Resource (Charite)ENSG00000111186
Other databases
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
CoreMineWNT5B
iHOPWNT5B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 17:04:39 CEST 2014

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