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WNT5B (wingless-type MMTV integration site family, member 5B)

Identity

Other names-
HGNC (Hugo) WNT5B
LocusID (NCBI) 81029
Location 12p13.33
Location_base_pair Starts at 1726222 and ends at 1756377 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)WNT5B   16265
Entrez_Gene (NCBI)WNT5B  81029  wingless-type MMTV integration site family, member 5B
Cards
GeneCards (Weizmann)WNT5B
Ensembl (Hinxton)ENSG00000111186 [Gene_View]  chr12:1726222-1756377 [Contig_View]  WNT5B [Vega]
AceView (NCBI)WNT5B
Genatlas (Paris)WNT5B
SOURCE (Stanford)NM_030775 NM_032642
Genomic and cartography
GoldenPath (UCSC)WNT5B  -  12p13.33   chr12:1726222-1756377 +  12p13.33   [Description]    (hg19-Feb_2009)
EnsemblWNT5B - 12p13.33 [CytoView]
Mapping of homologs : NCBIWNT5B [Mapview]
OMIM606361   
Gene and transcription
Genbank (Entrez)AB060966 AB209228 AK290430 AY009399 BC001749
RefSeq transcript (SRS)NM_030775 NM_032642
RefSeq transcript (Entrez)NM_030775 NM_032642
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NT_009759 NW_001838049 NW_004078074
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_009759 NW_001838049 NW_004078074
Consensus coding sequences : CCDS (NCBI)WNT5B
Cluster EST : UnigeneHs.306051 [ SRS ] Hs.306051 [ NCBI ]
CGAP (NCI)Hs.306051
Alternative Splicing : Fast-db (Paris)GSHG0006371
Alternative Splicing GalleryENSG00000111186
Gene ExpressionWNT5B [ NCBI-GEO ]   WNT5B [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1J7 (SRS) Q9H1J7 (Uniprot)
NextProtQ9H1J7
With graphics : InterProQ9H1J7
Splice isoforms : SwissVarQ9H1J7(Swissvar)
Domaine pattern : Prosite (SRS)WNT1 (PS00246)   
Domaine pattern : Prosite (Expaxy)WNT1 (PS00246)   
Domains : Interpro (SRS)Wnt    Wnt5b    Wnt_CS   
Domains : Interpro (EBI)Wnt    Wnt5b    Wnt_CS   
Related proteins : CluSTrQ9H1J7
Domain families : Pfam (SRS)wnt (PF00110)   
Domain families : Pfam (Sanger)wnt (PF00110)   
Domain families : Pfam (NCBI)pfam00110   
Domain families : Smart (EMBL)WNT1 (SM00097)  
DMDM81029
Blocks (Seattle)Q9H1J7
Human Protein AtlasENSG00000111186
HPRD05899
IPIIPI00022223   IPI01011558   IPI00747307   IPI01009461   IPI01016020   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1J7
IntAct (EBI)Q9H1J7
FunCoupENSG00000111186
REACTOMEWNT5B
Protein Interaction Database81029
BioGRIDWNT5B
InParanoidQ9H1J7
Interologous Interaction database Q9H1J7
IntegromeDBWNT5B
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)WNT5B
SNP (GeneSNP Utah)WNT5B
SNP : HGBaseWNT5B
Genetic variants : HAPMAPWNT5B
Somatic Mutations in Cancer : COSMICWNT5B 
CONAN: Copy Number AnalysisWNT5B 
Mutations and Diseases : HGMDWNT5B
OMIM606361   
GENETests606361   
Disease Genetic AssociationWNT5B
Huge Navigator WNT5B [HugePedia]  WNT5B [HugeCancerGEM]
Genomic VariantsWNT5B  WNT5B [DGVbeta]
snp3D : Map Gene to Disease81029
General knowledge
Homologs : HomoloGeneWNT5B
Homology/Alignments : Family Browser (UCSC)WNT5B
Phylogenetic Trees/Animal Genes : TreeFamWNT5B
Chemical/Protein Interactions : CTD81029
Chemical/Pharm GKB GenePA38104
Clinical trialWNT5B
Cancer Resource (Charite)ENSG00000111186
Ontology : AmiGOangiogenesis  chondrocyte differentiation  receptor binding  frizzled-2 binding  proteinaceous extracellular matrix  extracellular space  extracellular space  plasma membrane  Wnt receptor signaling pathway, calcium modulating pathway  dorsal/ventral axis specification  anterior/posterior pattern specification  cell surface  Wnt receptor signaling pathway  Wnt receptor signaling pathway  neuron differentiation  positive regulation of cell migration  endocrine pancreas development  wound healing  cell migration involved in gastrulation  fat cell differentiation  positive regulation of fat cell differentiation  convergent extension involved in gastrulation  convergent extension involved in axis elongation  respiratory system development  lens fiber cell development  cellular response to retinoic acid  negative regulation of canonical Wnt receptor signaling pathway  
Ontology : EGO-EBIangiogenesis  chondrocyte differentiation  receptor binding  frizzled-2 binding  proteinaceous extracellular matrix  extracellular space  extracellular space  plasma membrane  Wnt receptor signaling pathway, calcium modulating pathway  dorsal/ventral axis specification  anterior/posterior pattern specification  cell surface  Wnt receptor signaling pathway  Wnt receptor signaling pathway  neuron differentiation  positive regulation of cell migration  endocrine pancreas development  wound healing  cell migration involved in gastrulation  fat cell differentiation  positive regulation of fat cell differentiation  convergent extension involved in gastrulation  convergent extension involved in axis elongation  respiratory system development  lens fiber cell development  cellular response to retinoic acid  negative regulation of canonical Wnt receptor signaling pathway  
Pathways : KEGGHedgehog signaling pathwayWnt signaling pathway
Other databases
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
PubGeneWNT5B
iHOPWNT5B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:39:33 CEST 2013
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