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WNT5B (Wnt family member 5B)

Identity

Alias_nameswingless-type MMTV integration site family, member 5B
Other alias-
HGNC (Hugo) WNT5B
LocusID (NCBI) 81029
Atlas_Id 42826
Location 12p13.33  [Link to chromosome band 12p13]
Location_base_pair Starts at 1629246 and ends at 1647212 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADIPOR2 (12p13.33) / WNT5B (12p13.33)CACNA1C (12p13.33) / WNT5B (12p13.33)SEMA4C (2q11.2) / WNT5B (12p13.33)
WNT5B (12p13.33) / HIPK3 (11p13)WNT5B (12p13.33) / NINJ2 (12p13.33)WNT5B (12p13.33) / PPP2R1A (19q13.41)
ADIPOR2 12p13.33 / WNT5B 12p13.33CACNA1C 12p13.33 / WNT5B 12p13.33SEMA4C 2q11.2 / WNT5B 12p13.33
WNT5B 12p13.33 / NINJ2 12p13.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 4 ]

Solid Tumors TT_t0212q11p13ID105005 TT_t1212p13p13ID101153 TT_t1212p13p13ID101157 TT_t1212p13p13ID101205


External links

Nomenclature
HGNC (Hugo)WNT5B   16265
Cards
Entrez_Gene (NCBI)WNT5B  81029  Wnt family member 5B
Aliases
GeneCards (Weizmann)WNT5B
Ensembl hg19 (Hinxton)ENSG00000111186 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111186 [Gene_View]  ENSG00000111186 [Sequence]  chr12:1629246-1647212 [Contig_View]  WNT5B [Vega]
ICGC DataPortalENSG00000111186
TCGA cBioPortalWNT5B
AceView (NCBI)WNT5B
Genatlas (Paris)WNT5B
WikiGenes81029
SOURCE (Princeton)WNT5B
Genetics Home Reference (NIH)WNT5B
Genomic and cartography
GoldenPath hg38 (UCSC)WNT5B  -     chr12:1629246-1647212 +  12p13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WNT5B  -     12p13.33   [Description]    (hg19-Feb_2009)
GoldenPathWNT5B - 12p13.33 [CytoView hg19]  WNT5B - 12p13.33 [CytoView hg38]
ImmunoBaseENSG00000111186
Mapping of homologs : NCBIWNT5B [Mapview hg19]  WNT5B [Mapview hg38]
OMIM606361   
Gene and transcription
Genbank (Entrez)AB060966 AB209228 AK290430 AK294096 AY009399
RefSeq transcript (Entrez)NM_030775 NM_032642
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WNT5B
Alternative Splicing GalleryENSG00000111186
Gene ExpressionWNT5B [ NCBI-GEO ]   WNT5B [ EBI - ARRAY_EXPRESS ]   WNT5B [ SEEK ]   WNT5B [ MEM ]
Gene Expression Viewer (FireBrowse)WNT5B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)81029
GTEX Portal (Tissue expression)WNT5B
Human Protein AtlasENSG00000111186-WNT5B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)WNT5B
DMDM Disease mutations81029
Blocks (Seattle)WNT5B
Human Protein Atlas [tissue]ENSG00000111186-WNT5B [tissue]
HPRD05899
IPIIPI00022223   IPI01011558   IPI00747307   IPI01009461   IPI01016020   
Protein Interaction databases
FunCoupENSG00000111186
BioGRIDWNT5B
STRING (EMBL)WNT5B
ZODIACWNT5B
Ontologies - Pathways
Huge Navigator WNT5B [HugePedia]
snp3D : Map Gene to Disease81029
BioCentury BCIQWNT5B
ClinGenWNT5B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81029
Chemical/Pharm GKB GenePA38104
Clinical trialWNT5B
Miscellaneous
canSAR (ICR)WNT5B (select the gene name)
DataMed IndexWNT5B
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWNT5B
EVEXWNT5B
GoPubMedWNT5B
iHOPWNT5B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 19 17:16:42 CET 2020

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