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WNT8A (wingless-type MMTV integration site family, member 8A)

Identity

Other namesWNT8D
HGNC (Hugo) WNT8A
LocusID (NCBI) 7478
Location 5q31.2
Location_base_pair Starts at 137419774 and ends at 137427199 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)WNT8A   12788
Cards
Entrez_Gene (NCBI)WNT8A  7478  wingless-type MMTV integration site family, member 8A
GeneCards (Weizmann)WNT8A
Ensembl (Hinxton)ENSG00000061492 [Gene_View]  chr5:137419774-137427199 [Contig_View]  WNT8A [Vega]
ICGC DataPortalENSG00000061492
cBioPortalWNT8A
AceView (NCBI)WNT8A
Genatlas (Paris)WNT8A
WikiGenes7478
SOURCE (Princeton)NM_001300938 NM_001300939 NM_031933 NM_058244
Genomic and cartography
GoldenPath (UCSC)WNT8A  -  5q31.2   chr5:137419774-137427199 +  5q31.2   [Description]    (hg19-Feb_2009)
EnsemblWNT8A - 5q31.2 [CytoView]
Mapping of homologs : NCBIWNT8A [Mapview]
OMIM606360   
Gene and transcription
Genbank (Entrez)AB057725 AY009402 BC144001 BC144497 BC156844
RefSeq transcript (Entrez)NM_001300938 NM_001300939 NM_031933 NM_058244
RefSeq genomic (Entrez)AC_000137 NC_000005 NC_018916 NT_034772 NW_001838952 NW_004929323
Consensus coding sequences : CCDS (NCBI)WNT8A
Cluster EST : UnigeneHs.591274 [ NCBI ]
CGAP (NCI)Hs.591274
Alternative Splicing : Fast-db (Paris)GSHG0024266
Alternative Splicing GalleryENSG00000061492
Gene ExpressionWNT8A [ NCBI-GEO ]     WNT8A [ SEEK ]   WNT8A [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1J5 (Uniprot)
NextProtQ9H1J5  [Medical]
With graphics : InterProQ9H1J5
Splice isoforms : SwissVarQ9H1J5 (Swissvar)
Domaine pattern : Prosite (Expaxy)WNT1 (PS00246)   
Domains : Interpro (EBI)Wnt [organisation]   Wnt8 [organisation]   Wnt_CS [organisation]  
Related proteins : CluSTrQ9H1J5
Domain families : Pfam (Sanger)wnt (PF00110)   
Domain families : Pfam (NCBI)pfam00110   
Domain families : Smart (EMBL)WNT1 (SM00097)  
DMDM Disease mutations7478
Blocks (Seattle)Q9H1J5
Human Protein AtlasENSG00000061492 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9H1J5
HPRD05898
IPIIPI00926615   IPI00022222   IPI00964621   IPI00967684   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1J5
IntAct (EBI)Q9H1J5
FunCoupENSG00000061492
BioGRIDWNT8A
InParanoidQ9H1J5
Interologous Interaction database Q9H1J5
IntegromeDBWNT8A
STRING (EMBL)WNT8A
Ontologies - Pathways
Ontology : AmiGOfrizzled binding  extracellular region  proteinaceous extracellular matrix  extracellular space  extracellular space  endoderm development  polarity specification of anterior/posterior axis  polarity specification of proximal/distal axis  neural crest cell fate commitment  neuron differentiation  response to retinoic acid  regulation of protein localization  regulation of transcription involved in anterior/posterior axis specification  canonical Wnt signaling pathway involved in neural crest cell differentiation  receptor agonist activity  establishment of organ orientation  palate development  canonical Wnt signaling pathway  canonical Wnt signaling pathway  canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment  
Ontology : EGO-EBIfrizzled binding  extracellular region  proteinaceous extracellular matrix  extracellular space  extracellular space  endoderm development  polarity specification of anterior/posterior axis  polarity specification of proximal/distal axis  neural crest cell fate commitment  neuron differentiation  response to retinoic acid  regulation of protein localization  regulation of transcription involved in anterior/posterior axis specification  canonical Wnt signaling pathway involved in neural crest cell differentiation  receptor agonist activity  establishment of organ orientation  palate development  canonical Wnt signaling pathway  canonical Wnt signaling pathway  canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment  
Pathways : BIOCARTAWnt/LRP6 Signalling [Genes]   
Pathways : KEGGWnt signaling pathway    Hedgehog signaling pathway    Hippo signaling pathway    Melanogenesis    HTLV-I infection    Pathways in cancer    Proteoglycans in cancer    Basal cell carcinoma   
Protein Interaction DatabaseWNT8A
Wikipedia pathwaysWNT8A
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)WNT8A
snp3D : Map Gene to Disease7478
SNP (GeneSNP Utah)WNT8A
SNP : HGBaseWNT8A
Genetic variants : HAPMAPWNT8A
Exome VariantWNT8A
1000_GenomesWNT8A 
ICGC programENSG00000061492 
Somatic Mutations in Cancer : COSMICWNT8A 
CONAN: Copy Number AnalysisWNT8A 
Mutations and Diseases : HGMDWNT8A
Mutations and Diseases : intOGenWNT8A
Genomic VariantsWNT8A  WNT8A [DGVbeta]
dbVarWNT8A
ClinVarWNT8A
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM606360   
MedgenWNT8A
GENETestsWNT8A
Disease Genetic AssociationWNT8A
Huge Navigator WNT8A [HugePedia]  WNT8A [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneWNT8A
Homology/Alignments : Family Browser (UCSC)WNT8A
Phylogenetic Trees/Animal Genes : TreeFamWNT8A
Chemical/Protein Interactions : CTD7478
Chemical/Pharm GKB GenePA37389
Clinical trialWNT8A
Cancer Resource (Charite)ENSG00000061492
Other databases
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
CoreMineWNT8A
iHOPWNT8A
OncoSearchWNT8A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 17:10:24 CEST 2014

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