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WNT8A (Wnt family member 8A)

Identity

Other namesWNT8D
HGNC (Hugo) WNT8A
LocusID (NCBI) 7478
Atlas_Id 42830
Location 5q31.2
Location_base_pair Starts at 137419581 and ends at 137427230 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WNT8A   12788
Cards
Entrez_Gene (NCBI)WNT8A  7478  Wnt family member 8A
GeneCards (Weizmann)WNT8A
Ensembl hg19 (Hinxton)ENSG00000061492 [Gene_View]  chr5:137419581-137427230 [Contig_View]  WNT8A [Vega]
Ensembl hg38 (Hinxton)ENSG00000061492 [Gene_View]  chr5:137419581-137427230 [Contig_View]  WNT8A [Vega]
ICGC DataPortalENSG00000061492
TCGA cBioPortalWNT8A
AceView (NCBI)WNT8A
Genatlas (Paris)WNT8A
WikiGenes7478
SOURCE (Princeton)WNT8A
Genomic and cartography
GoldenPath hg19 (UCSC)WNT8A  -     chr5:137419581-137427230 +  5q31.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)WNT8A  -     5q31.2   [Description]    (hg38-Dec_2013)
EnsemblWNT8A - 5q31.2 [CytoView hg19]  WNT8A - 5q31.2 [CytoView hg38]
Mapping of homologs : NCBIWNT8A [Mapview hg19]  WNT8A [Mapview hg38]
OMIM606360   
Gene and transcription
Genbank (Entrez)AB057725 AY009402 BC144001 BC144497 BC156844
RefSeq transcript (Entrez)NM_001300938 NM_001300939 NM_031933 NM_058244
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929323
Consensus coding sequences : CCDS (NCBI)WNT8A
Cluster EST : UnigeneHs.591274 [ NCBI ]
CGAP (NCI)Hs.591274
Alternative Splicing : Fast-db (Paris)GSHG0024266
Alternative Splicing GalleryENSG00000061492
Gene ExpressionWNT8A [ NCBI-GEO ]   WNT8A [ EBI - ARRAY_EXPRESS ]   WNT8A [ SEEK ]   WNT8A [ MEM ]
Gene Expression Viewer (FireBrowse)WNT8A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)7478
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1J5 (Uniprot)
NextProtQ9H1J5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1J5
Splice isoforms : SwissVarQ9H1J5 (Swissvar)
PhosPhoSitePlusQ9H1J5
Domaine pattern : Prosite (Expaxy)WNT1 (PS00246)   
Domains : Interpro (EBI)Wnt    Wnt8    Wnt_CS   
Domain families : Pfam (Sanger)wnt (PF00110)   
Domain families : Pfam (NCBI)pfam00110   
Domain families : Smart (EMBL)WNT1 (SM00097)  
DMDM Disease mutations7478
Blocks (Seattle)WNT8A
SuperfamilyQ9H1J5
Human Protein AtlasENSG00000061492
Peptide AtlasQ9H1J5
HPRD05898
IPIIPI00926615   IPI00022222   IPI00964621   IPI00967684   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1J5
IntAct (EBI)Q9H1J5
FunCoupENSG00000061492
BioGRIDWNT8A
STRING (EMBL)WNT8A
ZODIACWNT8A
Ontologies - Pathways
QuickGOQ9H1J5
Ontology : AmiGOfrizzled binding  frizzled binding  extracellular region  proteinaceous extracellular matrix  extracellular space  extracellular space  neural crest cell fate commitment  Wnt signaling pathway  neuron differentiation  response to retinoic acid  regulation of transcription involved in anterior/posterior axis specification  canonical Wnt signaling pathway involved in neural crest cell differentiation  receptor agonist activity  palate development  canonical Wnt signaling pathway  canonical Wnt signaling pathway  canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment  beta-catenin destruction complex disassembly  
Ontology : EGO-EBIfrizzled binding  frizzled binding  extracellular region  proteinaceous extracellular matrix  extracellular space  extracellular space  neural crest cell fate commitment  Wnt signaling pathway  neuron differentiation  response to retinoic acid  regulation of transcription involved in anterior/posterior axis specification  canonical Wnt signaling pathway involved in neural crest cell differentiation  receptor agonist activity  palate development  canonical Wnt signaling pathway  canonical Wnt signaling pathway  canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment  beta-catenin destruction complex disassembly  
Pathways : BIOCARTAWnt/LRP6 Signalling [Genes]   
Pathways : KEGGWnt signaling pathway    Hedgehog signaling pathway    Hippo signaling pathway    Melanogenesis    HTLV-I infection    Pathways in cancer    Proteoglycans in cancer    Basal cell carcinoma   
NDEx Network
Atlas of Cancer Signalling NetworkWNT8A
Wikipedia pathwaysWNT8A
Orthology - Evolution
OrthoDB7478
GeneTree (enSembl)ENSG00000061492
Phylogenetic Trees/Animal Genes : TreeFamWNT8A
Homologs : HomoloGeneWNT8A
Homology/Alignments : Family Browser (UCSC)WNT8A
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerWNT8A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WNT8A
dbVarWNT8A
ClinVarWNT8A
1000_GenomesWNT8A 
Exome Variant ServerWNT8A
ExAC (Exome Aggregation Consortium)WNT8A (select the gene name)
SNP (GeneSNP Utah)WNT8A
SNP : HGBaseWNT8A
Genetic variants : HAPMAPWNT8A
Genomic Variants (DGV)WNT8A [DGVbeta]
Mutations
ICGC Data PortalWNT8A 
TCGA Data PortalWNT8A 
Broad Tumor PortalWNT8A
OASIS PortalWNT8A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWNT8A 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WNT8A
DgiDB (Drug Gene Interaction Database)WNT8A
DoCM (Curated mutations)WNT8A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WNT8A (select a term)
intoGenWNT8A
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)5:137419581-137427230
CONAN: Copy Number AnalysisWNT8A 
Mutations and Diseases : HGMDWNT8A
OMIM606360   
MedgenWNT8A
Genetic Testing Registry WNT8A
NextProtQ9H1J5 [Medical]
TSGene7478
GENETestsWNT8A
Huge Navigator WNT8A [HugePedia]  WNT8A [HugeCancerGEM]
snp3D : Map Gene to Disease7478
BioCentury BCIQWNT8A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7478
Chemical/Pharm GKB GenePA37389
Clinical trialWNT8A
Miscellaneous
canSAR (ICR)WNT8A (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWNT8A
GoPubMedWNT8A
iHOPWNT8A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Apr 16 18:10:06 CEST 2016

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