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WNT9A (Wnt family member 9A)

Identity

Alias_namesWNT14
wingless-type MMTV integration site family, member 14
wingless-type MMTV integration site family, member 9A
Other alias
HGNC (Hugo) WNT9A
LocusID (NCBI) 7483
Atlas_Id 42832
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228109165 and ends at 228135676 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
WNT9A (1q42.13) / HNRNPM (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WNT9A   12778
Cards
Entrez_Gene (NCBI)WNT9A  7483  Wnt family member 9A
AliasesWNT14
GeneCards (Weizmann)WNT9A
Ensembl hg19 (Hinxton)ENSG00000143816 [Gene_View]  chr1:228109165-228135676 [Contig_View]  WNT9A [Vega]
Ensembl hg38 (Hinxton)ENSG00000143816 [Gene_View]  chr1:228109165-228135676 [Contig_View]  WNT9A [Vega]
ICGC DataPortalENSG00000143816
TCGA cBioPortalWNT9A
AceView (NCBI)WNT9A
Genatlas (Paris)WNT9A
WikiGenes7483
SOURCE (Princeton)WNT9A
Genetics Home Reference (NIH)WNT9A
Genomic and cartography
GoldenPath hg19 (UCSC)WNT9A  -     chr1:228109165-228135676 -  1q42.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)WNT9A  -     1q42.13   [Description]    (hg38-Dec_2013)
EnsemblWNT9A - 1q42.13 [CytoView hg19]  WNT9A - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBIWNT9A [Mapview hg19]  WNT9A [Mapview hg38]
OMIM602863   
Gene and transcription
Genbank (Entrez)AB060283 AK131041 BC111960 BC113431 HQ258230
RefSeq transcript (Entrez)NM_003395
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_167186 NW_004929294
Consensus coding sequences : CCDS (NCBI)WNT9A
Cluster EST : UnigeneHs.149504 [ NCBI ]
CGAP (NCI)Hs.149504
Alternative Splicing GalleryENSG00000143816
Gene ExpressionWNT9A [ NCBI-GEO ]   WNT9A [ EBI - ARRAY_EXPRESS ]   WNT9A [ SEEK ]   WNT9A [ MEM ]
Gene Expression Viewer (FireBrowse)WNT9A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7483
GTEX Portal (Tissue expression)WNT9A
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14904   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14904  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14904
Splice isoforms : SwissVarO14904
PhosPhoSitePlusO14904
Domaine pattern : Prosite (Expaxy)WNT1 (PS00246)   
Domains : Interpro (EBI)Wnt    Wnt9a    Wnt_CS   
Domain families : Pfam (Sanger)wnt (PF00110)   
Domain families : Pfam (NCBI)pfam00110   
Domain families : Smart (EMBL)WNT1 (SM00097)  
Conserved Domain (NCBI)WNT9A
DMDM Disease mutations7483
Blocks (Seattle)WNT9A
SuperfamilyO14904
Human Protein AtlasENSG00000143816
Peptide AtlasO14904
HPRD04179
IPIIPI00220170   
Protein Interaction databases
DIP (DOE-UCLA)O14904
IntAct (EBI)O14904
FunCoupENSG00000143816
BioGRIDWNT9A
STRING (EMBL)WNT9A
ZODIACWNT9A
Ontologies - Pathways
QuickGOO14904
Ontology : AmiGOfrizzled binding  extracellular region  extracellular region  proteinaceous extracellular matrix  extracellular space  mitotic cell cycle checkpoint  cell-cell signaling  multicellular organism development  negative regulation of cell proliferation  Wnt signaling pathway  Wnt signaling pathway  neuron differentiation  neuron differentiation  negative regulation of chondrocyte differentiation  embryonic forelimb morphogenesis  negative regulation of cysteine-type endopeptidase activity involved in apoptotic process  cell fate commitment  positive regulation of cell differentiation  positive regulation of smoothened signaling pathway  embryonic skeletal system morphogenesis  canonical Wnt signaling pathway  iris morphogenesis  cornea development in camera-type eye  extracellular exosome  cellular response to retinoic acid  embryonic skeletal joint development  
Ontology : EGO-EBIfrizzled binding  extracellular region  extracellular region  proteinaceous extracellular matrix  extracellular space  mitotic cell cycle checkpoint  cell-cell signaling  multicellular organism development  negative regulation of cell proliferation  Wnt signaling pathway  Wnt signaling pathway  neuron differentiation  neuron differentiation  negative regulation of chondrocyte differentiation  embryonic forelimb morphogenesis  negative regulation of cysteine-type endopeptidase activity involved in apoptotic process  cell fate commitment  positive regulation of cell differentiation  positive regulation of smoothened signaling pathway  embryonic skeletal system morphogenesis  canonical Wnt signaling pathway  iris morphogenesis  cornea development in camera-type eye  extracellular exosome  cellular response to retinoic acid  embryonic skeletal joint development  
Pathways : KEGGWnt signaling pathway    Hedgehog signaling pathway    Hippo signaling pathway    Melanogenesis    HTLV-I infection    Pathways in cancer    Proteoglycans in cancer    Basal cell carcinoma   
NDEx NetworkWNT9A
Atlas of Cancer Signalling NetworkWNT9A
Wikipedia pathwaysWNT9A
Orthology - Evolution
OrthoDB7483
GeneTree (enSembl)ENSG00000143816
Phylogenetic Trees/Animal Genes : TreeFamWNT9A
HOVERGENO14904
HOGENOMO14904
Homologs : HomoloGeneWNT9A
Homology/Alignments : Family Browser (UCSC)WNT9A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWNT9A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WNT9A
dbVarWNT9A
ClinVarWNT9A
1000_GenomesWNT9A 
Exome Variant ServerWNT9A
ExAC (Exome Aggregation Consortium)WNT9A (select the gene name)
Genetic variants : HAPMAP7483
Genomic Variants (DGV)WNT9A [DGVbeta]
DECIPHER (Syndromes)1:228109165-228135676  ENSG00000143816
CONAN: Copy Number AnalysisWNT9A 
Mutations
ICGC Data PortalWNT9A 
TCGA Data PortalWNT9A 
Broad Tumor PortalWNT9A
OASIS PortalWNT9A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWNT9A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWNT9A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WNT9A
DgiDB (Drug Gene Interaction Database)WNT9A
DoCM (Curated mutations)WNT9A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WNT9A (select a term)
intoGenWNT9A
Cancer3DWNT9A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602863   
Orphanet
MedgenWNT9A
Genetic Testing Registry WNT9A
NextProtO14904 [Medical]
TSGene7483
GENETestsWNT9A
Huge Navigator WNT9A [HugePedia]
snp3D : Map Gene to Disease7483
BioCentury BCIQWNT9A
ClinGenWNT9A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7483
Chemical/Pharm GKB GenePA37379
Clinical trialWNT9A
Miscellaneous
canSAR (ICR)WNT9A (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWNT9A
EVEXWNT9A
GoPubMedWNT9A
iHOPWNT9A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Mar 30 15:25:07 CEST 2017

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