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WNT9B (Wnt family member 9B)

Identity

Alias_namesWNT15
wingless-type MMTV integration site family, member 15
wingless-type MMTV integration site family, member 9B
Alias_symbol (synonym)WNT14B
Other alias
HGNC (Hugo) WNT9B
LocusID (NCBI) 7484
Atlas_Id 42833
Location 17q21.32  [Link to chromosome band 17q21]
Location_base_pair Starts at 46851586 and ends at 46886730 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATP2A2 (12q24.11) / WNT9B (17q21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WNT9B   12779
Cards
Entrez_Gene (NCBI)WNT9B  7484  Wnt family member 9B
AliasesWNT14B; WNT15
GeneCards (Weizmann)WNT9B
Ensembl hg19 (Hinxton)ENSG00000158955 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158955 [Gene_View]  chr17:46851586-46886730 [Contig_View]  WNT9B [Vega]
ICGC DataPortalENSG00000158955
TCGA cBioPortalWNT9B
AceView (NCBI)WNT9B
Genatlas (Paris)WNT9B
WikiGenes7484
SOURCE (Princeton)WNT9B
Genetics Home Reference (NIH)WNT9B
Genomic and cartography
GoldenPath hg38 (UCSC)WNT9B  -     chr17:46851586-46886730 +  17q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WNT9B  -     17q21.32   [Description]    (hg19-Feb_2009)
EnsemblWNT9B - 17q21.32 [CytoView hg19]  WNT9B - 17q21.32 [CytoView hg38]
Mapping of homologs : NCBIWNT9B [Mapview hg19]  WNT9B [Mapview hg38]
OMIM602864   
Gene and transcription
Genbank (Entrez)AB063483 AK127268 AK127615 AY358217 BC064534
RefSeq transcript (Entrez)NM_001320458 NM_003396
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_029164 NT_187663
Consensus coding sequences : CCDS (NCBI)WNT9B
Cluster EST : UnigeneHs.326420 [ NCBI ]
CGAP (NCI)Hs.326420
Alternative Splicing GalleryENSG00000158955
Gene ExpressionWNT9B [ NCBI-GEO ]   WNT9B [ EBI - ARRAY_EXPRESS ]   WNT9B [ SEEK ]   WNT9B [ MEM ]
Gene Expression Viewer (FireBrowse)WNT9B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7484
GTEX Portal (Tissue expression)WNT9B
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14905   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14905  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14905
Splice isoforms : SwissVarO14905
PhosPhoSitePlusO14905
Domaine pattern : Prosite (Expaxy)WNT1 (PS00246)   
Domains : Interpro (EBI)Wnt    WNT9B    Wnt_CS   
Domain families : Pfam (Sanger)wnt (PF00110)   
Domain families : Pfam (NCBI)pfam00110   
Domain families : Smart (EMBL)WNT1 (SM00097)  
Conserved Domain (NCBI)WNT9B
DMDM Disease mutations7484
Blocks (Seattle)WNT9B
SuperfamilyO14905
Human Protein AtlasENSG00000158955
Peptide AtlasO14905
HPRD04180
IPIIPI00298876   IPI00742882   IPI00444577   
Protein Interaction databases
DIP (DOE-UCLA)O14905
IntAct (EBI)O14905
FunCoupENSG00000158955
BioGRIDWNT9B
STRING (EMBL)WNT9B
ZODIACWNT9B
Ontologies - Pathways
QuickGOO14905
Ontology : AmiGObranching involved in ureteric bud morphogenesis  in utero embryonic development  regulation of protein phosphorylation  regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis  frizzled binding  extracellular region  extracellular region  proteinaceous extracellular matrix  extracellular space  cell-cell signaling  multicellular organism development  cellular response to starvation  regulation of asymmetric cell division  Wnt signaling pathway  neuron differentiation  male genitalia development  response to retinoic acid  regulation of tube size  co-receptor binding  positive regulation of catalytic activity  cell fate commitment  embryonic cranial skeleton morphogenesis  palate development  canonical Wnt signaling pathway  Wnt signaling pathway, planar cell polarity pathway  uterus morphogenesis  cornea development in camera-type eye  cellular response to retinoic acid  kidney rudiment formation  mesenchymal stem cell maintenance involved in nephron morphogenesis  collecting duct development  establishment of planar polarity involved in nephron morphogenesis  metanephric tubule formation  mesonephric duct formation  negative regulation of stem cell population maintenance  midbrain dopaminergic neuron differentiation  non-canonical Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation  
Ontology : EGO-EBIbranching involved in ureteric bud morphogenesis  in utero embryonic development  regulation of protein phosphorylation  regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis  frizzled binding  extracellular region  extracellular region  proteinaceous extracellular matrix  extracellular space  cell-cell signaling  multicellular organism development  cellular response to starvation  regulation of asymmetric cell division  Wnt signaling pathway  neuron differentiation  male genitalia development  response to retinoic acid  regulation of tube size  co-receptor binding  positive regulation of catalytic activity  cell fate commitment  embryonic cranial skeleton morphogenesis  palate development  canonical Wnt signaling pathway  Wnt signaling pathway, planar cell polarity pathway  uterus morphogenesis  cornea development in camera-type eye  cellular response to retinoic acid  kidney rudiment formation  mesenchymal stem cell maintenance involved in nephron morphogenesis  collecting duct development  establishment of planar polarity involved in nephron morphogenesis  metanephric tubule formation  mesonephric duct formation  negative regulation of stem cell population maintenance  midbrain dopaminergic neuron differentiation  non-canonical Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation  
Pathways : KEGGWnt signaling pathway    Hedgehog signaling pathway    Hippo signaling pathway    Melanogenesis    HTLV-I infection    Pathways in cancer    Proteoglycans in cancer    Basal cell carcinoma   
NDEx NetworkWNT9B
Atlas of Cancer Signalling NetworkWNT9B
Wikipedia pathwaysWNT9B
Orthology - Evolution
OrthoDB7484
GeneTree (enSembl)ENSG00000158955
Phylogenetic Trees/Animal Genes : TreeFamWNT9B
HOVERGENO14905
HOGENOMO14905
Homologs : HomoloGeneWNT9B
Homology/Alignments : Family Browser (UCSC)WNT9B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWNT9B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WNT9B
dbVarWNT9B
ClinVarWNT9B
1000_GenomesWNT9B 
Exome Variant ServerWNT9B
ExAC (Exome Aggregation Consortium)WNT9B (select the gene name)
Genetic variants : HAPMAP7484
Genomic Variants (DGV)WNT9B [DGVbeta]
DECIPHERWNT9B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWNT9B 
Mutations
ICGC Data PortalWNT9B 
TCGA Data PortalWNT9B 
Broad Tumor PortalWNT9B
OASIS PortalWNT9B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWNT9B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWNT9B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WNT9B
DgiDB (Drug Gene Interaction Database)WNT9B
DoCM (Curated mutations)WNT9B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WNT9B (select a term)
intoGenWNT9B
Cancer3DWNT9B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602864   
Orphanet
MedgenWNT9B
Genetic Testing Registry WNT9B
NextProtO14905 [Medical]
TSGene7484
GENETestsWNT9B
Target ValidationWNT9B
Huge Navigator WNT9B [HugePedia]
snp3D : Map Gene to Disease7484
BioCentury BCIQWNT9B
ClinGenWNT9B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7484
Chemical/Pharm GKB GenePA37380
Clinical trialWNT9B
Miscellaneous
canSAR (ICR)WNT9B (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWNT9B
EVEXWNT9B
GoPubMedWNT9B
iHOPWNT9B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:02:57 CEST 2017

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