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WRNIP1 (Werner helicase interacting protein 1)

Identity

Alias_symbol (synonym)WHIP
FLJ22526
bA420G6.2
Other alias
HGNC (Hugo) WRNIP1
LocusID (NCBI) 56897
Atlas_Id 42834
Location 6p25.2  [Link to chromosome band 6p25]
Location_base_pair Starts at 2765432 and ends at 2785745 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WRNIP1   20876
Cards
Entrez_Gene (NCBI)WRNIP1  56897  Werner helicase interacting protein 1
AliasesWHIP; bA420G6.2
GeneCards (Weizmann)WRNIP1
Ensembl hg19 (Hinxton)ENSG00000124535 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124535 [Gene_View]  chr6:2765432-2785745 [Contig_View]  WRNIP1 [Vega]
ICGC DataPortalENSG00000124535
TCGA cBioPortalWRNIP1
AceView (NCBI)WRNIP1
Genatlas (Paris)WRNIP1
WikiGenes56897
SOURCE (Princeton)WRNIP1
Genetics Home Reference (NIH)WRNIP1
Genomic and cartography
GoldenPath hg38 (UCSC)WRNIP1  -     chr6:2765432-2785745 +  6p25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WRNIP1  -     6p25.2   [Description]    (hg19-Feb_2009)
EnsemblWRNIP1 - 6p25.2 [CytoView hg19]  WRNIP1 - 6p25.2 [CytoView hg38]
Mapping of homologs : NCBIWRNIP1 [Mapview hg19]  WRNIP1 [Mapview hg38]
OMIM608196   
Gene and transcription
Genbank (Entrez)AB056152 AB209723 AF218313 AK026179 AK094823
RefSeq transcript (Entrez)NM_020135 NM_130395
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WRNIP1
Cluster EST : UnigeneHs.236828 [ NCBI ]
CGAP (NCI)Hs.236828
Alternative Splicing GalleryENSG00000124535
Gene ExpressionWRNIP1 [ NCBI-GEO ]   WRNIP1 [ EBI - ARRAY_EXPRESS ]   WRNIP1 [ SEEK ]   WRNIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)WRNIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56897
GTEX Portal (Tissue expression)WRNIP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96S55   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96S55  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96S55
Splice isoforms : SwissVarQ96S55
PhosPhoSitePlusQ96S55
Domains : Interpro (EBI)AAA+_ATPase    AAA_assoc_2    ATPase_AAA_core    DNA_pol3_clamp-load_cplx_C    MgsA_C    P-loop_NTPase    Znf_Rad18_put   
Domain families : Pfam (Sanger)AAA (PF00004)    AAA_assoc_2 (PF16193)    MgsA_C (PF12002)   
Domain families : Pfam (NCBI)pfam00004    pfam16193    pfam12002   
Domain families : Smart (EMBL)AAA (SM00382)  ZnF_Rad18 (SM00734)  
Conserved Domain (NCBI)WRNIP1
DMDM Disease mutations56897
Blocks (Seattle)WRNIP1
PDB (SRS)3VHS    3VHT   
PDB (PDBSum)3VHS    3VHT   
PDB (IMB)3VHS    3VHT   
PDB (RSDB)3VHS    3VHT   
Structural Biology KnowledgeBase3VHS    3VHT   
SCOP (Structural Classification of Proteins)3VHS    3VHT   
CATH (Classification of proteins structures)3VHS    3VHT   
SuperfamilyQ96S55
Human Protein AtlasENSG00000124535
Peptide AtlasQ96S55
HPRD10494
IPIIPI00290314   IPI00102997   IPI00645459   IPI00642533   IPI00902976   
Protein Interaction databases
DIP (DOE-UCLA)Q96S55
IntAct (EBI)Q96S55
FunCoupENSG00000124535
BioGRIDWRNIP1
STRING (EMBL)WRNIP1
ZODIACWRNIP1
Ontologies - Pathways
QuickGOQ96S55
Ontology : AmiGODNA synthesis involved in DNA repair  nuclear chromosome, telomeric region  DNA binding  protein binding  ATP binding  nucleus  nucleus  DNA replication  membrane  ATPase activity  regulation of DNA-dependent DNA replication initiation  identical protein binding  metal ion binding  perinuclear region of cytoplasm  
Ontology : EGO-EBIDNA synthesis involved in DNA repair  nuclear chromosome, telomeric region  DNA binding  protein binding  ATP binding  nucleus  nucleus  DNA replication  membrane  ATPase activity  regulation of DNA-dependent DNA replication initiation  identical protein binding  metal ion binding  perinuclear region of cytoplasm  
NDEx NetworkWRNIP1
Atlas of Cancer Signalling NetworkWRNIP1
Wikipedia pathwaysWRNIP1
Orthology - Evolution
OrthoDB56897
GeneTree (enSembl)ENSG00000124535
Phylogenetic Trees/Animal Genes : TreeFamWRNIP1
HOVERGENQ96S55
HOGENOMQ96S55
Homologs : HomoloGeneWRNIP1
Homology/Alignments : Family Browser (UCSC)WRNIP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWRNIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WRNIP1
dbVarWRNIP1
ClinVarWRNIP1
1000_GenomesWRNIP1 
Exome Variant ServerWRNIP1
ExAC (Exome Aggregation Consortium)WRNIP1 (select the gene name)
Genetic variants : HAPMAP56897
Genomic Variants (DGV)WRNIP1 [DGVbeta]
DECIPHERWRNIP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWRNIP1 
Mutations
ICGC Data PortalWRNIP1 
TCGA Data PortalWRNIP1 
Broad Tumor PortalWRNIP1
OASIS PortalWRNIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWRNIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWRNIP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WRNIP1
DgiDB (Drug Gene Interaction Database)WRNIP1
DoCM (Curated mutations)WRNIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WRNIP1 (select a term)
intoGenWRNIP1
Cancer3DWRNIP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608196   
Orphanet
MedgenWRNIP1
Genetic Testing Registry WRNIP1
NextProtQ96S55 [Medical]
TSGene56897
GENETestsWRNIP1
Target ValidationWRNIP1
Huge Navigator WRNIP1 [HugePedia]
snp3D : Map Gene to Disease56897
BioCentury BCIQWRNIP1
ClinGenWRNIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56897
Chemical/Pharm GKB GenePA134982239
Clinical trialWRNIP1
Miscellaneous
canSAR (ICR)WRNIP1 (select the gene name)
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWRNIP1
EVEXWRNIP1
GoPubMedWRNIP1
iHOPWRNIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:11:48 CEST 2017

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