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WSCD1 (WSC domain containing 1)

Identity

Alias_symbol (synonym)KIAA0523
Other alias-
HGNC (Hugo) WSCD1
LocusID (NCBI) 23302
Atlas_Id 75769
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 6070614 and ends at 6124427 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NDEL1 (17p13.1) / WSCD1 (17p13.2)WSCD1 (17p13.2) / PTDSS1 (8q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WSCD1   29060
Cards
Entrez_Gene (NCBI)WSCD1  23302  WSC domain containing 1
Aliases
GeneCards (Weizmann)WSCD1
Ensembl hg19 (Hinxton)ENSG00000179314 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179314 [Gene_View]  chr17:6070614-6124427 [Contig_View]  WSCD1 [Vega]
ICGC DataPortalENSG00000179314
TCGA cBioPortalWSCD1
AceView (NCBI)WSCD1
Genatlas (Paris)WSCD1
WikiGenes23302
SOURCE (Princeton)WSCD1
Genetics Home Reference (NIH)WSCD1
Genomic and cartography
GoldenPath hg38 (UCSC)WSCD1  -     chr17:6070614-6124427 +  17p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WSCD1  -     17p13.2   [Description]    (hg19-Feb_2009)
EnsemblWSCD1 - 17p13.2 [CytoView hg19]  WSCD1 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBIWSCD1 [Mapview hg19]  WSCD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB011095 AK000243 AK289603 AK309645 AL833730
RefSeq transcript (Entrez)NM_015253
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WSCD1
Cluster EST : UnigeneHs.370166 [ NCBI ]
CGAP (NCI)Hs.370166
Alternative Splicing GalleryENSG00000179314
Gene ExpressionWSCD1 [ NCBI-GEO ]   WSCD1 [ EBI - ARRAY_EXPRESS ]   WSCD1 [ SEEK ]   WSCD1 [ MEM ]
Gene Expression Viewer (FireBrowse)WSCD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23302
GTEX Portal (Tissue expression)WSCD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ658N2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ658N2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ658N2
Splice isoforms : SwissVarQ658N2
PhosPhoSitePlusQ658N2
Domaine pattern : Prosite (Expaxy)WSC (PS51212)   
Domains : Interpro (EBI)P-loop_NTPase    Sulfotransferase_dom    WSC_carb-bd   
Domain families : Pfam (Sanger)Sulfotransfer_1 (PF00685)    WSC (PF01822)   
Domain families : Pfam (NCBI)pfam00685    pfam01822   
Domain families : Smart (EMBL)WSC (SM00321)  
Conserved Domain (NCBI)WSCD1
DMDM Disease mutations23302
Blocks (Seattle)WSCD1
SuperfamilyQ658N2
Human Protein AtlasENSG00000179314
Peptide AtlasQ658N2
HPRD17193
IPIIPI00550677   
Protein Interaction databases
DIP (DOE-UCLA)Q658N2
IntAct (EBI)Q658N2
FunCoupENSG00000179314
BioGRIDWSCD1
STRING (EMBL)WSCD1
ZODIACWSCD1
Ontologies - Pathways
QuickGOQ658N2
Ontology : AmiGOsulfotransferase activity  integral component of membrane  
Ontology : EGO-EBIsulfotransferase activity  integral component of membrane  
NDEx NetworkWSCD1
Atlas of Cancer Signalling NetworkWSCD1
Wikipedia pathwaysWSCD1
Orthology - Evolution
OrthoDB23302
GeneTree (enSembl)ENSG00000179314
Phylogenetic Trees/Animal Genes : TreeFamWSCD1
HOVERGENQ658N2
HOGENOMQ658N2
Homologs : HomoloGeneWSCD1
Homology/Alignments : Family Browser (UCSC)WSCD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWSCD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WSCD1
dbVarWSCD1
ClinVarWSCD1
1000_GenomesWSCD1 
Exome Variant ServerWSCD1
ExAC (Exome Aggregation Consortium)WSCD1 (select the gene name)
Genetic variants : HAPMAP23302
Genomic Variants (DGV)WSCD1 [DGVbeta]
DECIPHERWSCD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWSCD1 
Mutations
ICGC Data PortalWSCD1 
TCGA Data PortalWSCD1 
Broad Tumor PortalWSCD1
OASIS PortalWSCD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWSCD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWSCD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WSCD1
DgiDB (Drug Gene Interaction Database)WSCD1
DoCM (Curated mutations)WSCD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WSCD1 (select a term)
intoGenWSCD1
Cancer3DWSCD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWSCD1
Genetic Testing Registry WSCD1
NextProtQ658N2 [Medical]
TSGene23302
GENETestsWSCD1
Target ValidationWSCD1
Huge Navigator WSCD1 [HugePedia]
snp3D : Map Gene to Disease23302
BioCentury BCIQWSCD1
ClinGenWSCD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23302
Chemical/Pharm GKB GenePA162409253
Clinical trialWSCD1
Miscellaneous
canSAR (ICR)WSCD1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWSCD1
EVEXWSCD1
GoPubMedWSCD1
iHOPWSCD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:08 CEST 2017

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