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WSCD2 (WSC domain containing 2)

Identity

Alias_symbol (synonym)KIAA0789
Other alias-
HGNC (Hugo) WSCD2
LocusID (NCBI) 9671
Atlas_Id 75770
Location 12q23.3  [Link to chromosome band 12q23]
Location_base_pair Starts at 108131731 and ends at 108250536 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C1orf21 (1q25.3) / WSCD2 (12q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WSCD2   29117
Cards
Entrez_Gene (NCBI)WSCD2  9671  WSC domain containing 2
Aliases
GeneCards (Weizmann)WSCD2
Ensembl hg19 (Hinxton)ENSG00000075035 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000075035 [Gene_View]  chr12:108131731-108250536 [Contig_View]  WSCD2 [Vega]
ICGC DataPortalENSG00000075035
TCGA cBioPortalWSCD2
AceView (NCBI)WSCD2
Genatlas (Paris)WSCD2
WikiGenes9671
SOURCE (Princeton)WSCD2
Genetics Home Reference (NIH)WSCD2
Genomic and cartography
GoldenPath hg38 (UCSC)WSCD2  -     chr12:108131731-108250536 +  12q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WSCD2  -     12q23.3   [Description]    (hg19-Feb_2009)
EnsemblWSCD2 - 12q23.3 [CytoView hg19]  WSCD2 - 12q23.3 [CytoView hg38]
Mapping of homologs : NCBIWSCD2 [Mapview hg19]  WSCD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB018332 AK098069 AK293764 BC010411 BC037969
RefSeq transcript (Entrez)NM_001304447 NM_014653
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WSCD2
Cluster EST : UnigeneHs.143591 [ NCBI ]
CGAP (NCI)Hs.143591
Alternative Splicing GalleryENSG00000075035
Gene ExpressionWSCD2 [ NCBI-GEO ]   WSCD2 [ EBI - ARRAY_EXPRESS ]   WSCD2 [ SEEK ]   WSCD2 [ MEM ]
Gene Expression Viewer (FireBrowse)WSCD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9671
GTEX Portal (Tissue expression)WSCD2
Human Protein AtlasENSG00000075035-WSCD2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2TBF2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2TBF2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2TBF2
Splice isoforms : SwissVarQ2TBF2
PhosPhoSitePlusQ2TBF2
Domaine pattern : Prosite (Expaxy)WSC (PS51212)   
Domains : Interpro (EBI)P-loop_NTPase    WSC_carb-bd   
Domain families : Pfam (Sanger)WSC (PF01822)   
Domain families : Pfam (NCBI)pfam01822   
Domain families : Smart (EMBL)WSC (SM00321)  
Conserved Domain (NCBI)WSCD2
DMDM Disease mutations9671
Blocks (Seattle)WSCD2
SuperfamilyQ2TBF2
Human Protein Atlas [tissue]ENSG00000075035-WSCD2 [tissue]
Peptide AtlasQ2TBF2
HPRD17196
IPIIPI00005652   IPI00217627   IPI01020949   
Protein Interaction databases
DIP (DOE-UCLA)Q2TBF2
IntAct (EBI)Q2TBF2
FunCoupENSG00000075035
BioGRIDWSCD2
STRING (EMBL)WSCD2
ZODIACWSCD2
Ontologies - Pathways
QuickGOQ2TBF2
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkWSCD2
Atlas of Cancer Signalling NetworkWSCD2
Wikipedia pathwaysWSCD2
Orthology - Evolution
OrthoDB9671
GeneTree (enSembl)ENSG00000075035
Phylogenetic Trees/Animal Genes : TreeFamWSCD2
HOVERGENQ2TBF2
HOGENOMQ2TBF2
Homologs : HomoloGeneWSCD2
Homology/Alignments : Family Browser (UCSC)WSCD2
Gene fusions - Rearrangements
Tumor Fusion PortalWSCD2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWSCD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WSCD2
dbVarWSCD2
ClinVarWSCD2
1000_GenomesWSCD2 
Exome Variant ServerWSCD2
ExAC (Exome Aggregation Consortium)ENSG00000075035
GNOMAD BrowserENSG00000075035
Genetic variants : HAPMAP9671
Genomic Variants (DGV)WSCD2 [DGVbeta]
DECIPHERWSCD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWSCD2 
Mutations
ICGC Data PortalWSCD2 
TCGA Data PortalWSCD2 
Broad Tumor PortalWSCD2
OASIS PortalWSCD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWSCD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWSCD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WSCD2
DgiDB (Drug Gene Interaction Database)WSCD2
DoCM (Curated mutations)WSCD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WSCD2 (select a term)
intoGenWSCD2
Cancer3DWSCD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETWSCD2
MedgenWSCD2
Genetic Testing Registry WSCD2
NextProtQ2TBF2 [Medical]
TSGene9671
GENETestsWSCD2
Target ValidationWSCD2
Huge Navigator WSCD2 [HugePedia]
snp3D : Map Gene to Disease9671
BioCentury BCIQWSCD2
ClinGenWSCD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9671
Chemical/Pharm GKB GenePA162409276
Clinical trialWSCD2
Miscellaneous
canSAR (ICR)WSCD2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWSCD2
EVEXWSCD2
GoPubMedWSCD2
iHOPWSCD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:27:43 CET 2017

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