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WSPAR (WNT signaling pathway activating non-coding RNA)

Identity

Alias_symbol (synonym)TCONS_00009511-XLOC_004555
lncTCF7
Other aliasLncTCF7
TCONS_00009511
HGNC (Hugo) WSPAR
LocusID (NCBI) 105664404
Atlas_Id 76673
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 133913677 and ends at 133917269 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WSPAR   51639
Cards
Entrez_Gene (NCBI)WSPAR  105664404  WNT signaling pathway activating non-coding RNA
AliasesLncTCF7; TCONS_00009511
GeneCards (Weizmann)WSPAR
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:133913677-133917269 [Contig_View]  WSPAR [Vega]
TCGA cBioPortalWSPAR
AceView (NCBI)WSPAR
Genatlas (Paris)WSPAR
WikiGenes105664404
SOURCE (Princeton)WSPAR
Genetics Home Reference (NIH)WSPAR
Genomic and cartography
GoldenPath hg38 (UCSC)WSPAR  -     chr5:133913677-133917269 +  5q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WSPAR  -     5q31.1   [Description]    (hg19-Feb_2009)
EnsemblWSPAR - 5q31.1 [CytoView hg19]  WSPAR - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBIWSPAR [Mapview hg19]  WSPAR [Mapview hg38]
OMIM616333   
Gene and transcription
Genbank (Entrez)BE270324
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WSPAR
Cluster EST : UnigeneHs.582536 [ NCBI ]
CGAP (NCI)Hs.582536
Gene ExpressionWSPAR [ NCBI-GEO ]   WSPAR [ EBI - ARRAY_EXPRESS ]   WSPAR [ SEEK ]   WSPAR [ MEM ]
Gene Expression Viewer (FireBrowse)WSPAR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105664404
GTEX Portal (Tissue expression)WSPAR
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)WSPAR
DMDM Disease mutations105664404
Blocks (Seattle)WSPAR
Protein Interaction databases
BioGRIDWSPAR
STRING (EMBL)WSPAR
ZODIACWSPAR
Ontologies - Pathways
Huge Navigator WSPAR [HugePedia]
snp3D : Map Gene to Disease105664404
BioCentury BCIQWSPAR
ClinGenWSPAR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105664404
Clinical trialWSPAR
Miscellaneous
canSAR (ICR)WSPAR (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWSPAR
EVEXWSPAR
GoPubMedWSPAR
iHOPWSPAR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:35:55 CET 2017

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