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WSPAR (WNT signaling pathway activating non-coding RNA)

Identity

Alias (NCBI)LncTCF7
TCONS_00009511
HGNC (Hugo) WSPAR
HGNC Alias symbTCONS_00009511-XLOC_004555
lncTCF7
LocusID (NCBI) 105664404
Atlas_Id 58153
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 133913677 and ends at 133917269 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)WSPAR   51639
Cards
Entrez_Gene (NCBI)WSPAR    WNT signaling pathway activating non-coding RNA
AliasesLncTCF7; TCONS_00009511
GeneCards (Weizmann)WSPAR
Ensembl hg19 (Hinxton)ENSG00000249073 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249073 [Gene_View]  ENSG00000249073 [Sequence]  chr5:133913677-133917269 [Contig_View]  WSPAR [Vega]
ICGC DataPortalENSG00000249073
TCGA cBioPortalWSPAR
AceView (NCBI)WSPAR
Genatlas (Paris)WSPAR
SOURCE (Princeton)WSPAR
Genetics Home Reference (NIH)WSPAR
Genomic and cartography
GoldenPath hg38 (UCSC)WSPAR  -     chr5:133913677-133917269 +  5q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WSPAR  -     5q31.1   [Description]    (hg19-Feb_2009)
GoldenPathWSPAR - 5q31.1 [CytoView hg19]  WSPAR - 5q31.1 [CytoView hg38]
ImmunoBaseENSG00000249073
Genome Data Viewer NCBIWSPAR [Mapview hg19]  
OMIM616333   
Gene and transcription
Genbank (Entrez)BE270324
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)WSPAR
Gene ExpressionWSPAR [ NCBI-GEO ]   WSPAR [ EBI - ARRAY_EXPRESS ]   WSPAR [ SEEK ]   WSPAR [ MEM ]
Gene Expression Viewer (FireBrowse)WSPAR [ Firebrowse - Broad ]
GenevisibleExpression of WSPAR in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)105664404
GTEX Portal (Tissue expression)WSPAR
Human Protein AtlasENSG00000249073-WSPAR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)WSPAR
Human Protein Atlas [tissue]ENSG00000249073-WSPAR [tissue]
Protein Interaction databases
BioGRIDWSPAR
STRING (EMBL)WSPAR
ZODIACWSPAR
Ontologies - Pathways
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXWSPAR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:38:28 CEST 2021

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