Atlas of Genetics and Cytogenetics in Oncology and Haematology


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WTAPP1 (Wilms tumor 1 associated protein pseudogene 1)

Identity

Other alias-
HGNC (Hugo) WTAPP1
LocusID (NCBI) 100288077
Atlas_Id 52443
Location 6q25.3  [Link to chromosome band 6q25]
Location_base_pair Starts at 102783676 and ends at 102836766 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WTAPP1   44115
Cards
Entrez_Gene (NCBI)WTAPP1  100288077  Wilms tumor 1 associated protein pseudogene 1
Aliases
GeneCards (Weizmann)WTAPP1
Ensembl hg19 (Hinxton)ENSG00000255282 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255282 [Gene_View]  ENSG00000255282 [Sequence]  chr11:102783676-102836766 [Contig_View]  WTAPP1 [Vega]
ICGC DataPortalENSG00000255282
TCGA cBioPortalWTAPP1
AceView (NCBI)WTAPP1
Genatlas (Paris)WTAPP1
WikiGenes100288077
SOURCE (Princeton)WTAPP1
Genetics Home Reference (NIH)WTAPP1
Genomic and cartography
GoldenPath hg38 (UCSC)WTAPP1  -     chr11:102783676-102836766 +  6q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WTAPP1  -     6q25.3   [Description]    (hg19-Feb_2009)
EnsemblWTAPP1 - 6q25.3 [CytoView hg19]  WTAPP1 - 6q25.3 [CytoView hg38]
Mapping of homologs : NCBIWTAPP1 [Mapview hg19]  WTAPP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097805
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WTAPP1
Cluster EST : UnigeneHs.661772 [ NCBI ]
CGAP (NCI)Hs.661772
Alternative Splicing GalleryENSG00000255282
Gene ExpressionWTAPP1 [ NCBI-GEO ]   WTAPP1 [ EBI - ARRAY_EXPRESS ]   WTAPP1 [ SEEK ]   WTAPP1 [ MEM ]
Gene Expression Viewer (FireBrowse)WTAPP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100288077
GTEX Portal (Tissue expression)WTAPP1
Human Protein AtlasENSG00000255282-WTAPP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)WTAPP1
DMDM Disease mutations100288077
Blocks (Seattle)WTAPP1
Human Protein Atlas [tissue]ENSG00000255282-WTAPP1 [tissue]
Protein Interaction databases
FunCoupENSG00000255282
BioGRIDWTAPP1
STRING (EMBL)WTAPP1
ZODIACWTAPP1
Ontologies - Pathways
Huge Navigator WTAPP1 [HugePedia]
snp3D : Map Gene to Disease100288077
BioCentury BCIQWTAPP1
ClinGenWTAPP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100288077
Clinical trialWTAPP1
Miscellaneous
canSAR (ICR)WTAPP1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWTAPP1
EVEXWTAPP1
GoPubMedWTAPP1
iHOPWTAPP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Aug 16 11:41:54 CEST 2018

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