Atlas of Genetics and Cytogenetics in Oncology and Haematology


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XAB2 (XPA binding protein 2)

Identity

Alias_symbol (synonym)HCNP
HCRN
SYF1
NTC90
Other alias
HGNC (Hugo) XAB2
LocusID (NCBI) 56949
Atlas_Id 42840
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 7619525 and ends at 7629553 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KCNMA1 (10q22.3) / XAB2 (19p13.2)XAB2 (19p13.2) / FBXL13 (7q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XAB2   14089
Cards
Entrez_Gene (NCBI)XAB2  56949  XPA binding protein 2
AliasesHCNP; HCRN; NTC90; SYF1
GeneCards (Weizmann)XAB2
Ensembl hg19 (Hinxton)ENSG00000076924 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000076924 [Gene_View]  chr19:7619525-7629553 [Contig_View]  XAB2 [Vega]
ICGC DataPortalENSG00000076924
TCGA cBioPortalXAB2
AceView (NCBI)XAB2
Genatlas (Paris)XAB2
WikiGenes56949
SOURCE (Princeton)XAB2
Genetics Home Reference (NIH)XAB2
Genomic and cartography
GoldenPath hg38 (UCSC)XAB2  -     chr19:7619525-7629553 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XAB2  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblXAB2 - 19p13.2 [CytoView hg19]  XAB2 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIXAB2 [Mapview hg19]  XAB2 [Mapview hg38]
OMIM610850   
Gene and transcription
Genbank (Entrez)AB026111 AB033003 AF226051 AF258567 AF272147
RefSeq transcript (Entrez)NM_020196
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XAB2
Cluster EST : UnigeneHs.9822 [ NCBI ]
CGAP (NCI)Hs.9822
Alternative Splicing GalleryENSG00000076924
Gene ExpressionXAB2 [ NCBI-GEO ]   XAB2 [ EBI - ARRAY_EXPRESS ]   XAB2 [ SEEK ]   XAB2 [ MEM ]
Gene Expression Viewer (FireBrowse)XAB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56949
GTEX Portal (Tissue expression)XAB2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HCS7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HCS7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HCS7
Splice isoforms : SwissVarQ9HCS7
PhosPhoSitePlusQ9HCS7
Domains : Interpro (EBI)HAT    TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam13181   
Domain families : Smart (EMBL)HAT (SM00386)  TPR (SM00028)  
Conserved Domain (NCBI)XAB2
DMDM Disease mutations56949
Blocks (Seattle)XAB2
SuperfamilyQ9HCS7
Human Protein AtlasENSG00000076924
Peptide AtlasQ9HCS7
HPRD18306
IPIIPI00163084   IPI01015328   
Protein Interaction databases
DIP (DOE-UCLA)Q9HCS7
IntAct (EBI)Q9HCS7
FunCoupENSG00000076924
BioGRIDXAB2
STRING (EMBL)XAB2
ZODIACXAB2
Ontologies - Pathways
QuickGOQ9HCS7
Ontology : AmiGOmRNA splicing, via spliceosome  mRNA splicing, via spliceosome  blastocyst development  protein binding  nucleus  nucleoplasm  transcription-coupled nucleotide-excision repair  transcription-coupled nucleotide-excision repair  transcription, DNA-templated  membrane  cerebral cortex development  catalytic step 2 spliceosome  
Ontology : EGO-EBImRNA splicing, via spliceosome  mRNA splicing, via spliceosome  blastocyst development  protein binding  nucleus  nucleoplasm  transcription-coupled nucleotide-excision repair  transcription-coupled nucleotide-excision repair  transcription, DNA-templated  membrane  cerebral cortex development  catalytic step 2 spliceosome  
Pathways : KEGGSpliceosome   
NDEx NetworkXAB2
Atlas of Cancer Signalling NetworkXAB2
Wikipedia pathwaysXAB2
Orthology - Evolution
OrthoDB56949
GeneTree (enSembl)ENSG00000076924
Phylogenetic Trees/Animal Genes : TreeFamXAB2
HOVERGENQ9HCS7
HOGENOMQ9HCS7
Homologs : HomoloGeneXAB2
Homology/Alignments : Family Browser (UCSC)XAB2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXAB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XAB2
dbVarXAB2
ClinVarXAB2
1000_GenomesXAB2 
Exome Variant ServerXAB2
ExAC (Exome Aggregation Consortium)XAB2 (select the gene name)
Genetic variants : HAPMAP56949
Genomic Variants (DGV)XAB2 [DGVbeta]
DECIPHERXAB2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisXAB2 
Mutations
ICGC Data PortalXAB2 
TCGA Data PortalXAB2 
Broad Tumor PortalXAB2
OASIS PortalXAB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICXAB2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDXAB2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch XAB2
DgiDB (Drug Gene Interaction Database)XAB2
DoCM (Curated mutations)XAB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XAB2 (select a term)
intoGenXAB2
Cancer3DXAB2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610850   
Orphanet
MedgenXAB2
Genetic Testing Registry XAB2
NextProtQ9HCS7 [Medical]
TSGene56949
GENETestsXAB2
Target ValidationXAB2
Huge Navigator XAB2 [HugePedia]
snp3D : Map Gene to Disease56949
BioCentury BCIQXAB2
ClinGenXAB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56949
Chemical/Pharm GKB GenePA134905925
Clinical trialXAB2
Miscellaneous
canSAR (ICR)XAB2 (select the gene name)
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXAB2
EVEXXAB2
GoPubMedXAB2
iHOPXAB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:19:01 CEST 2017

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