Atlas of Genetics and Cytogenetics in Oncology and Haematology

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XAB2 (XPA binding protein 2)

Identity

Other namesDKFZp762C1015
HCNP
HCRN
NTC90
SYF1
HGNC (Hugo) XAB2
Location 19p13.2
Location_base_pair Starts at 7590411 and ends at 7600439 bp from pter ( according to hg18-March_2006)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)XAB2   14089
Entrez_Gene (NCBI)XAB2  56949  XPA binding protein 2
Cards
GeneCards (Weizmann)XAB2
Ensembl (Hinxton)ENSG00000076924 [Gene_View]  XAB2 [Vega]
AceView (NCBI)XAB2
Genatlas (Paris)XAB2
euGene (Indiana)56949
SOURCE (Stanford)NM_020196
Gene Expression (Array Express) ENSG00000076924
Genomic and cartography
GoldenPath (UCSC)XAB2  -  19p13.2   chr19:7590411-7600439 -  19p13.2   [Description]    (hg18-March_2006)
EnsemblXAB2 - 19p13.2 [CytoView]
Mapping of homologs : NCBIXAB2 [Mapview]
OMIM610850   
Gene and transcription
Gene : Genbank (Entrez)AB026111 AB033003 AF226051 AF258567 AF272147
Reference sequence (RefSeq transcript) :SRSNM_020196
Reference transcript : EntrezNM_020196
RefSeq genomic : SRSAC_000062 AC_000151 NC_000019 NT_077812 NW_001838480 NW_927173
RefSeq genomic : EntrezAC_000062 AC_000151 NC_000019 NT_077812 NW_001838480 NW_927173
Consensus coding sequences : CCDS NCBIXAB2
Cluster EST : UnigeneHs.9822 [ SRS ] Hs.9822 [ NCBI ]
Alternative Splicing : Fast-db (Paris)4029
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ9HCS7 (SRS) Q9HCS7 (Expasy) Q9HCS7 (Uniprot)
With graphics : InterProQ9HCS7
Splice isoforms : VarSplice FASTAQ9HCS7(VarSplice FASTA)
Domains : Interpro (SRS)HAT    TPR-contain    TPR-like_helical    TPR_repeat   
Domains : Interpro (EBI)HAT    TPR-contain    TPR-like_helical    TPR_repeat   
Related proteins : CluSTrQ9HCS7
Domain families : Pfam SRS
Domain families : Pfam Sanger
Domain families : Pfam NCBI
Domain families : Smart EMBLHAT (SM00386)  
Blocks (Seattle)Q9HCS7
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD18306
Protein Interaction databases
DIP (DOE-UCLA)Q9HCS7
IntAct (EBI)Q9HCS7
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIXAB2
SNP : GeneSNP UtahXAB2
SNP : HGBaseXAB2
Genetic variants : HAPMAPXAB2
Somatic Mutations in Cancer : COSMICXAB2 
Mutations and Diseases : HGMDXAB2
Hereditary diseases : OMIM610850   
Hereditary diseases : GENETests610850   
Diseases : Genetic AssociationXAB2
General knowledge
Homologs : HomoloGeneXAB2
Homology/Alignments : Family Browser UCSCXAB2
Phylogenetic Trees/Animal Genes : TreeFamXAB2
Chemical/Protein Interactions : CTD56949
Keywords Ontology : AmiGOblastocyst development  protein binding  intracellular  nucleus  nucleoplasm  spliceosomal complex  DNA repair  transcription-coupled nucleotide-excision repair  transcription  mRNA processing  response to DNA damage stimulus  RNA splicing  
Keywords Ontology : EGO-EBIblastocyst development  protein binding  intracellular  nucleus  nucleoplasm  spliceosomal complex  DNA repair  transcription-coupled nucleotide-excision repair  transcription  mRNA processing  response to DNA damage stimulus  RNA splicing  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesXAB2 Related clones (RZPD - Berlin)
Literature
PubMed12 Pubmed reference(s) in Entrez
PubGeneXAB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated03-2009Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 27 10:41:21 CET 2010
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