Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

XAGE1B (X antigen family member 1B)

Identity

Alias_namesmember 1b
Alias_symbol (synonym)CT12.1b
Other aliasCT12.1
CT12.1C
CT12.1D
CT12.1E
CTP9
GAGED2
XAGE-1
XAGE1
XAGE1C
XAGE1D
XAGE1E
HGNC (Hugo) XAGE1B
LocusID (NCBI) 653067
Atlas_Id 47547
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 52495821 and ends at 52500811 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XAGE1B   25400
Cards
Entrez_Gene (NCBI)XAGE1B  653067  X antigen family member 1B
AliasesCT12.1; CT12.1C; CT12.1D; CT12.1E; 
CT12.1b; CTP9; GAGED2; XAGE-1; XAGE1; XAGE1C; XAGE1D; XAGE1E
GeneCards (Weizmann)XAGE1B
Ensembl hg19 (Hinxton)ENSG00000204382 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204382 [Gene_View]  ENSG00000204382 [Sequence]  chrX:52495821-52500811 [Contig_View]  XAGE1B [Vega]
ICGC DataPortalENSG00000204382
TCGA cBioPortalXAGE1B
AceView (NCBI)XAGE1B
Genatlas (Paris)XAGE1B
WikiGenes653067
SOURCE (Princeton)XAGE1B
Genetics Home Reference (NIH)XAGE1B
Genomic and cartography
GoldenPath hg38 (UCSC)XAGE1B  -     chrX:52495821-52500811 +  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XAGE1B  -     Xp11.22   [Description]    (hg19-Feb_2009)
EnsemblXAGE1B - Xp11.22 [CytoView hg19]  XAGE1B - Xp11.22 [CytoView hg38]
Mapping of homologs : NCBIXAGE1B [Mapview hg19]  XAGE1B [Mapview hg38]
OMIM300289   300744   300745   
Gene and transcription
Genbank (Entrez)AF251237 AJ290447 AJ318878 AJ318879 BC009538
RefSeq transcript (Entrez)NM_001097597 NM_001097598 NM_001097602 NM_001097603 NM_001097604 NM_001097605 NM_020411 NM_133430 NM_133431
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XAGE1B
Cluster EST : UnigeneHs.584511 [ NCBI ]
CGAP (NCI)Hs.584511
Alternative Splicing GalleryENSG00000204382
Gene ExpressionXAGE1B [ NCBI-GEO ]   XAGE1B [ EBI - ARRAY_EXPRESS ]   XAGE1B [ SEEK ]   XAGE1B [ MEM ]
Gene Expression Viewer (FireBrowse)XAGE1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653067
GTEX Portal (Tissue expression)XAGE1B
Human Protein AtlasENSG00000204382-XAGE1B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HD64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HD64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HD64
Splice isoforms : SwissVarQ9HD64
PhosPhoSitePlusQ9HD64
Domains : Interpro (EBI)GAGE_fam   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)XAGE1B
DMDM Disease mutations653067
Blocks (Seattle)XAGE1B
SuperfamilyQ9HD64
Human Protein Atlas [tissue]ENSG00000204382-XAGE1B [tissue]
Peptide AtlasQ9HD64
Protein Interaction databases
DIP (DOE-UCLA)Q9HD64
IntAct (EBI)Q9HD64
FunCoupENSG00000204382
BioGRIDXAGE1B
STRING (EMBL)XAGE1B
ZODIACXAGE1B
Ontologies - Pathways
QuickGOQ9HD64
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkXAGE1B
Atlas of Cancer Signalling NetworkXAGE1B
Wikipedia pathwaysXAGE1B
Orthology - Evolution
OrthoDB653067
GeneTree (enSembl)ENSG00000204382
Phylogenetic Trees/Animal Genes : TreeFamXAGE1B
HOVERGENQ9HD64
HOGENOMQ9HD64
Homologs : HomoloGeneXAGE1B
Homology/Alignments : Family Browser (UCSC)XAGE1B
Gene fusions - Rearrangements
Fusion : QuiverXAGE1B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXAGE1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XAGE1B
dbVarXAGE1B
ClinVarXAGE1B
1000_GenomesXAGE1B 
Exome Variant ServerXAGE1B
ExAC (Exome Aggregation Consortium)ENSG00000204382
GNOMAD BrowserENSG00000204382
Varsome BrowserXAGE1B
Genetic variants : HAPMAP653067
Genomic Variants (DGV)XAGE1B [DGVbeta]
DECIPHERXAGE1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisXAGE1B 
Mutations
ICGC Data PortalXAGE1B 
TCGA Data PortalXAGE1B 
Broad Tumor PortalXAGE1B
OASIS PortalXAGE1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICXAGE1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDXAGE1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch XAGE1B
DgiDB (Drug Gene Interaction Database)XAGE1B
DoCM (Curated mutations)XAGE1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XAGE1B (select a term)
intoGenXAGE1B
Cancer3DXAGE1B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300289    300744    300745   
Orphanet
DisGeNETXAGE1B
MedgenXAGE1B
Genetic Testing Registry XAGE1B
NextProtQ9HD64 [Medical]
TSGene653067
GENETestsXAGE1B
Target ValidationXAGE1B
Huge Navigator XAGE1B [HugePedia]
snp3D : Map Gene to Disease653067
BioCentury BCIQXAGE1B
ClinGenXAGE1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653067
Chemical/Pharm GKB GenePA145147618
Clinical trialXAGE1B
Miscellaneous
canSAR (ICR)XAGE1B (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXAGE1B
EVEXXAGE1B
GoPubMedXAGE1B
iHOPXAGE1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:50:17 CET 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.