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XAGE1B (X antigen family member 1B)

Identity

Alias_namesmember 1b
Alias_symbol (synonym)CT12.1b
Other aliasCT12.1
CT12.1A
CT12.1B
CTP9
GAGED2
XAGE-1
XAGE1
XAGE1A
HGNC (Hugo) XAGE1B
LocusID (NCBI) 653220
Atlas_Id 47547
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 52495668 and ends at 52500811 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XAGE1B   25400
Cards
Entrez_Gene (NCBI)XAGE1B  653220  X antigen family member 1B
AliasesCT12.1; CT12.1A; CT12.1B; CTP9; 
GAGED2; XAGE-1; XAGE1; XAGE1A
GeneCards (Weizmann)XAGE1B
Ensembl hg19 (Hinxton)ENSG00000204379 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204379 [Gene_View]  chrX:52495668-52500811 [Contig_View]  XAGE1B [Vega]
ICGC DataPortalENSG00000204379
TCGA cBioPortalXAGE1B
AceView (NCBI)XAGE1B
Genatlas (Paris)XAGE1B
WikiGenes653220
SOURCE (Princeton)XAGE1B
Genetics Home Reference (NIH)XAGE1B
Genomic and cartography
GoldenPath hg38 (UCSC)XAGE1B  -     chrX:52495668-52500811 +  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XAGE1B  -     Xp11.22   [Description]    (hg19-Feb_2009)
EnsemblXAGE1B - Xp11.22 [CytoView hg19]  XAGE1B - Xp11.22 [CytoView hg38]
Mapping of homologs : NCBIXAGE1B [Mapview hg19]  XAGE1B [Mapview hg38]
OMIM300742   300743   
Gene and transcription
Genbank (Entrez)AF251237 AJ290447 AJ318878 AJ318879 BC009538
RefSeq transcript (Entrez)NM_001097591 NM_001097592 NM_001097593 NM_001097594 NM_001097595 NM_001097596
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XAGE1B
Cluster EST : UnigeneHs.584511 [ NCBI ]
CGAP (NCI)Hs.584511
Alternative Splicing GalleryENSG00000204379
Gene ExpressionXAGE1B [ NCBI-GEO ]   XAGE1B [ EBI - ARRAY_EXPRESS ]   XAGE1B [ SEEK ]   XAGE1B [ MEM ]
Gene Expression Viewer (FireBrowse)XAGE1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653220
GTEX Portal (Tissue expression)XAGE1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HD64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HD64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HD64
Splice isoforms : SwissVarQ9HD64
PhosPhoSitePlusQ9HD64
Domains : Interpro (EBI)GAGE_fam   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)XAGE1B
DMDM Disease mutations653220
Blocks (Seattle)XAGE1B
SuperfamilyQ9HD64
Human Protein AtlasENSG00000204379
Peptide AtlasQ9HD64
Protein Interaction databases
DIP (DOE-UCLA)Q9HD64
IntAct (EBI)Q9HD64
FunCoupENSG00000204379
BioGRIDXAGE1B
STRING (EMBL)XAGE1B
ZODIACXAGE1B
Ontologies - Pathways
QuickGOQ9HD64
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkXAGE1B
Atlas of Cancer Signalling NetworkXAGE1B
Wikipedia pathwaysXAGE1B
Orthology - Evolution
OrthoDB653220
GeneTree (enSembl)ENSG00000204379
Phylogenetic Trees/Animal Genes : TreeFamXAGE1B
HOVERGENQ9HD64
HOGENOMQ9HD64
Homologs : HomoloGeneXAGE1B
Homology/Alignments : Family Browser (UCSC)XAGE1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXAGE1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XAGE1B
dbVarXAGE1B
ClinVarXAGE1B
1000_GenomesXAGE1B 
Exome Variant ServerXAGE1B
ExAC (Exome Aggregation Consortium)XAGE1B (select the gene name)
Genetic variants : HAPMAP653220
Genomic Variants (DGV)XAGE1B [DGVbeta]
DECIPHERXAGE1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisXAGE1B 
Mutations
ICGC Data PortalXAGE1B 
TCGA Data PortalXAGE1B 
Broad Tumor PortalXAGE1B
OASIS PortalXAGE1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICXAGE1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDXAGE1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch XAGE1B
DgiDB (Drug Gene Interaction Database)XAGE1B
DoCM (Curated mutations)XAGE1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XAGE1B (select a term)
intoGenXAGE1B
Cancer3DXAGE1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300742    300743   
Orphanet
MedgenXAGE1B
Genetic Testing Registry XAGE1B
NextProtQ9HD64 [Medical]
TSGene653220
GENETestsXAGE1B
Target ValidationXAGE1B
Huge Navigator XAGE1B [HugePedia]
snp3D : Map Gene to Disease653220
BioCentury BCIQXAGE1B
ClinGenXAGE1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653220
Chemical/Pharm GKB GenePA145147615
Clinical trialXAGE1B
Miscellaneous
canSAR (ICR)XAGE1B (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXAGE1B
EVEXXAGE1B
GoPubMedXAGE1B
iHOPXAGE1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:03:00 CEST 2017

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