Atlas of Genetics and Cytogenetics in Oncology and Haematology

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XAGE1D (X antigen family, member 1D)

Identity

Other namesCT12.1
CT12.1D
CTP9
HGNC (Hugo) XAGE1D
LocusID (NCBI) 9503
Location Xp11.22
Location_base_pair Starts at 52238810 and ends at 52243953 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)XAGE1D   21508
Entrez_Gene (NCBI)XAGE1D  9503  X antigen family, member 1D
Cards
GeneCards (Weizmann)XAGE1D
Ensembl (Hinxton)ENSG00000204376 [Gene_View]  chrX:52238810-52243953 [Contig_View]  XAGE1D [Vega]
AceView (NCBI)XAGE1D
Genatlas (Paris)XAGE1D
SOURCE (Stanford)NM_020411 NM_133430 NM_133431
Genomic and cartography
GoldenPath (UCSC)XAGE1D  -  Xp11.22   chrX:52238810-52243953 +  Xp11.22   [Description]    (hg19-Feb_2009)
EnsemblXAGE1D - Xp11.22 [CytoView]
Mapping of homologs : NCBIXAGE1D [Mapview]
OMIM300289   
Gene and transcription
Genbank (Entrez)AF251237 AJ290447 AJ318878 AJ318879 BC009538
RefSeq transcript (SRS)NM_020411 NM_133430 NM_133431
RefSeq transcript (Entrez)NM_020411 NM_133430 NM_133431
RefSeq genomic (SRS)NC_000023 NG_029951 NT_011630 NW_001841599
RefSeq genomic (Entrez)NC_000023 NG_029951 NT_011630 NW_001841599
Consensus coding sequences : CCDS (NCBI)XAGE1D
Cluster EST : UnigeneHs.584511 [ SRS ] Hs.584511 [ NCBI ]
CGAP (NCI)Hs.584511
Alternative Splicing : Fast-db (Paris)GSHG0031548
Alternative Splicing GalleryENSG00000204376
Gene ExpressionXAGE1D [ NCBI-GEO ]   XAGE1D [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HD64 (SRS) Q9HD64 (Uniprot)
NextProtQ9HD64
With graphics : InterProQ9HD64
Splice isoforms : SwissVarQ9HD64(Swissvar)
Domains : Interpro (SRS)GAGE   
Domains : Interpro (EBI)GAGE   
Related proteins : CluSTrQ9HD64
Domain families : Pfam (SRS)GAGE (PF05831)   
Domain families : Pfam (Sanger)GAGE (PF05831)   
Domain families : Pfam (NCBI)pfam05831   
DMDM9503
Blocks (Seattle)Q9HD64
Human Protein AtlasENSG00000204376
HPRD02241
Protein Interaction databases
DIP (DOE-UCLA)Q9HD64
IntAct (EBI)Q9HD64
FunCoupENSG00000204376
REACTOMEXAGE1D
Protein Interaction Database9503
BioGRIDXAGE1D
InParanoidQ9HD64
Interologous Interaction database Q9HD64
IntegromeDBXAGE1D
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)XAGE1D
SNP (GeneSNP Utah)XAGE1D
SNP : HGBaseXAGE1D
Genetic variants : HAPMAPXAGE1D
Mutations and Diseases : HGMDXAGE1D
OMIM300289   
GENETests300289   
Disease Genetic AssociationXAGE1D
Huge Navigator XAGE1D [HugePedia]  XAGE1D [HugeCancerGEM]
Genomic VariantsXAGE1D  XAGE1D [DGVbeta]
snp3D : Map Gene to Disease9503
General knowledge
Homologs : HomoloGeneXAGE1D
Homology/Alignments : Family Browser (UCSC)XAGE1D
Phylogenetic Trees/Animal Genes : TreeFamXAGE1D
Chemical/Protein Interactions : CTD9503
Chemical/Pharm GKB GenePA28526
Clinical trialXAGE1D
Cancer Resource (Charite)ENSG00000204376
Ontology : AmiGO
Ontology : EGO-EBI
Other databases
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
PubGeneXAGE1D
iHOPXAGE1D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:25:23 CEST 2013
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