Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

XAGE1E (X antigen family member 1E)

Identity

Alias_namesX antigen family
Other aliasCT12.1
CT12.1C
CT12.1D
CT12.1E
CTP9
GAGED2
XAGE-1
XAGE1
XAGE1C
XAGE1D
HGNC (Hugo) XAGE1E
LocusID (NCBI) 653067
Atlas_Id 53880
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 52495668 and ends at 52500811 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XAGE1E   18372
Cards
Entrez_Gene (NCBI)XAGE1E  653067  X antigen family member 1E
AliasesCT12.1; CT12.1C; CT12.1D; CT12.1E; 
CTP9; GAGED2; XAGE-1; XAGE1; XAGE1C; XAGE1D
GeneCards (Weizmann)XAGE1E
Ensembl hg19 (Hinxton)ENSG00000204382 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204382 [Gene_View]  chrX:52495668-52500811 [Contig_View]  XAGE1E [Vega]
ICGC DataPortalENSG00000204382
TCGA cBioPortalXAGE1E
AceView (NCBI)XAGE1E
Genatlas (Paris)XAGE1E
WikiGenes653067
SOURCE (Princeton)XAGE1E
Genetics Home Reference (NIH)XAGE1E
Genomic and cartography
GoldenPath hg38 (UCSC)XAGE1E  -     chrX:52495668-52500811 +  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XAGE1E  -     Xp11.22   [Description]    (hg19-Feb_2009)
EnsemblXAGE1E - Xp11.22 [CytoView hg19]  XAGE1E - Xp11.22 [CytoView hg38]
Mapping of homologs : NCBIXAGE1E [Mapview hg19]  XAGE1E [Mapview hg38]
OMIM300289   300744   300745   
Gene and transcription
Genbank (Entrez)AF251237 AJ290447 AJ318878 AJ318879 BC009538
RefSeq transcript (Entrez)NM_001097597 NM_001097598 NM_001097602 NM_001097603 NM_001097604 NM_001097605 NM_020411 NM_133430 NM_133431
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XAGE1E
Cluster EST : UnigeneHs.584511 [ NCBI ]
CGAP (NCI)Hs.584511
Alternative Splicing GalleryENSG00000204382
Gene ExpressionXAGE1E [ NCBI-GEO ]   XAGE1E [ EBI - ARRAY_EXPRESS ]   XAGE1E [ SEEK ]   XAGE1E [ MEM ]
Gene Expression Viewer (FireBrowse)XAGE1E [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653067
GTEX Portal (Tissue expression)XAGE1E
Human Protein AtlasENSG00000204382-XAGE1E [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HD64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HD64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HD64
Splice isoforms : SwissVarQ9HD64
PhosPhoSitePlusQ9HD64
Domains : Interpro (EBI)GAGE_fam   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)XAGE1E
DMDM Disease mutations653067
Blocks (Seattle)XAGE1E
SuperfamilyQ9HD64
Human Protein Atlas [tissue]ENSG00000204382-XAGE1E [tissue]
Peptide AtlasQ9HD64
Protein Interaction databases
DIP (DOE-UCLA)Q9HD64
IntAct (EBI)Q9HD64
FunCoupENSG00000204382
BioGRIDXAGE1E
STRING (EMBL)XAGE1E
ZODIACXAGE1E
Ontologies - Pathways
QuickGOQ9HD64
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkXAGE1E
Atlas of Cancer Signalling NetworkXAGE1E
Wikipedia pathwaysXAGE1E
Orthology - Evolution
OrthoDB653067
GeneTree (enSembl)ENSG00000204382
Phylogenetic Trees/Animal Genes : TreeFamXAGE1E
HOVERGENQ9HD64
HOGENOMQ9HD64
Homologs : HomoloGeneXAGE1E
Homology/Alignments : Family Browser (UCSC)XAGE1E
Gene fusions - Rearrangements
Tumor Fusion PortalXAGE1E
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXAGE1E [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XAGE1E
dbVarXAGE1E
ClinVarXAGE1E
1000_GenomesXAGE1E 
Exome Variant ServerXAGE1E
ExAC (Exome Aggregation Consortium)ENSG00000204382
GNOMAD BrowserENSG00000204382
Genetic variants : HAPMAP653067
Genomic Variants (DGV)XAGE1E [DGVbeta]
DECIPHERXAGE1E [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisXAGE1E 
Mutations
ICGC Data PortalXAGE1E 
TCGA Data PortalXAGE1E 
Broad Tumor PortalXAGE1E
OASIS PortalXAGE1E [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDXAGE1E
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch XAGE1E
DgiDB (Drug Gene Interaction Database)XAGE1E
DoCM (Curated mutations)XAGE1E (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XAGE1E (select a term)
intoGenXAGE1E
Cancer3DXAGE1E(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300289    300744    300745   
Orphanet
DisGeNETXAGE1E
MedgenXAGE1E
Genetic Testing Registry XAGE1E
NextProtQ9HD64 [Medical]
TSGene653067
GENETestsXAGE1E
Target ValidationXAGE1E
Huge Navigator XAGE1E [HugePedia]
snp3D : Map Gene to Disease653067
BioCentury BCIQXAGE1E
ClinGenXAGE1E
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653067
Chemical/Pharm GKB GenePA145147618
Clinical trialXAGE1E
Miscellaneous
canSAR (ICR)XAGE1E (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXAGE1E
EVEXXAGE1E
GoPubMedXAGE1E
iHOPXAGE1E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:41:50 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.