Atlas of Genetics and Cytogenetics in Oncology and Haematology


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XAGE2 (X antigen family member 2)

Identity

Alias_namesmember 2
GAGED3
XAGE2B
Alias_symbol (synonym)XAGE-2
CT12.2
Other alias
HGNC (Hugo) XAGE2
LocusID (NCBI) 9502
Atlas_Id 43018
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 52369010 and ends at 52375683 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XAGE2   4112
Cards
Entrez_Gene (NCBI)XAGE2  9502  X antigen family member 2
AliasesCT12.2; GAGED3; XAGE-2; XAGE2B
GeneCards (Weizmann)XAGE2
Ensembl hg19 (Hinxton)ENSG00000155622 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155622 [Gene_View]  chrX:52369010-52375683 [Contig_View]  XAGE2 [Vega]
ICGC DataPortalENSG00000155622
TCGA cBioPortalXAGE2
AceView (NCBI)XAGE2
Genatlas (Paris)XAGE2
WikiGenes9502
SOURCE (Princeton)XAGE2
Genetics Home Reference (NIH)XAGE2
Genomic and cartography
GoldenPath hg38 (UCSC)XAGE2  -     chrX:52369010-52375683 +  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XAGE2  -     Xp11.22   [Description]    (hg19-Feb_2009)
EnsemblXAGE2 - Xp11.22 [CytoView hg19]  XAGE2 - Xp11.22 [CytoView hg38]
Mapping of homologs : NCBIXAGE2 [Mapview hg19]  XAGE2 [Mapview hg38]
OMIM300416   
Gene and transcription
Genbank (Entrez)AI740470 AJ318880 BC009232 BC066311 DQ893147
RefSeq transcript (Entrez)NM_130777
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XAGE2
Cluster EST : UnigeneHs.522654 [ NCBI ]
CGAP (NCI)Hs.522654
Alternative Splicing GalleryENSG00000155622
Gene ExpressionXAGE2 [ NCBI-GEO ]   XAGE2 [ EBI - ARRAY_EXPRESS ]   XAGE2 [ SEEK ]   XAGE2 [ MEM ]
Gene Expression Viewer (FireBrowse)XAGE2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9502
GTEX Portal (Tissue expression)XAGE2
Human Protein AtlasENSG00000155622-XAGE2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96GT9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96GT9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96GT9
Splice isoforms : SwissVarQ96GT9
PhosPhoSitePlusQ96GT9
Domains : Interpro (EBI)GAGE    GAGE_fam   
Domain families : Pfam (Sanger)GAGE (PF05831)   
Domain families : Pfam (NCBI)pfam05831   
Domain families : Smart (EMBL)GAGE (SM01379)  
Conserved Domain (NCBI)XAGE2
DMDM Disease mutations9502
Blocks (Seattle)XAGE2
SuperfamilyQ96GT9
Human Protein Atlas [tissue]ENSG00000155622-XAGE2 [tissue]
Peptide AtlasQ96GT9
HPRD02332
Protein Interaction databases
DIP (DOE-UCLA)Q96GT9
IntAct (EBI)Q96GT9
FunCoupENSG00000155622
BioGRIDXAGE2
STRING (EMBL)XAGE2
ZODIACXAGE2
Ontologies - Pathways
QuickGOQ96GT9
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkXAGE2
Atlas of Cancer Signalling NetworkXAGE2
Wikipedia pathwaysXAGE2
Orthology - Evolution
OrthoDB9502
GeneTree (enSembl)ENSG00000155622
Phylogenetic Trees/Animal Genes : TreeFamXAGE2
HOVERGENQ96GT9
HOGENOMQ96GT9
Homologs : HomoloGeneXAGE2
Homology/Alignments : Family Browser (UCSC)XAGE2
Gene fusions - Rearrangements
Tumor Fusion PortalXAGE2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXAGE2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XAGE2
dbVarXAGE2
ClinVarXAGE2
1000_GenomesXAGE2 
Exome Variant ServerXAGE2
ExAC (Exome Aggregation Consortium)ENSG00000155622
GNOMAD BrowserENSG00000155622
Genetic variants : HAPMAP9502
Genomic Variants (DGV)XAGE2 [DGVbeta]
DECIPHERXAGE2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisXAGE2 
Mutations
ICGC Data PortalXAGE2 
TCGA Data PortalXAGE2 
Broad Tumor PortalXAGE2
OASIS PortalXAGE2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDXAGE2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch XAGE2
DgiDB (Drug Gene Interaction Database)XAGE2
DoCM (Curated mutations)XAGE2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XAGE2 (select a term)
intoGenXAGE2
Cancer3DXAGE2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300416   
Orphanet
DisGeNETXAGE2
MedgenXAGE2
Genetic Testing Registry XAGE2
NextProtQ96GT9 [Medical]
TSGene9502
GENETestsXAGE2
Target ValidationXAGE2
Huge Navigator XAGE2 [HugePedia]
snp3D : Map Gene to Disease9502
BioCentury BCIQXAGE2
ClinGenXAGE2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9502
Chemical/Pharm GKB GenePA28527
Clinical trialXAGE2
Miscellaneous
canSAR (ICR)XAGE2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXAGE2
EVEXXAGE2
GoPubMedXAGE2
iHOPXAGE2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:41:50 CET 2017

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