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XAGE3 (X antigen family member 3)

Identity

Alias_namesPLAC6
GAGED4
placenta-specific 6; G antigen, family D, 4
X antigen family, member 3
Alias_symbol (synonym)XAGE-3
pp9012
CT12.3a
CT12.3b
Other alias
HGNC (Hugo) XAGE3
LocusID (NCBI) 170626
Atlas_Id 43019
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 52862529 and ends at 52867301 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XAGE3   14618
Cards
Entrez_Gene (NCBI)XAGE3  170626  X antigen family member 3
AliasesCT12.3a; CT12.3b; GAGED4; PLAC6; 
XAGE-3; pp9012
GeneCards (Weizmann)XAGE3
Ensembl hg19 (Hinxton)ENSG00000171402 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171402 [Gene_View]  chrX:52862529-52867301 [Contig_View]  XAGE3 [Vega]
ICGC DataPortalENSG00000171402
TCGA cBioPortalXAGE3
AceView (NCBI)XAGE3
Genatlas (Paris)XAGE3
WikiGenes170626
SOURCE (Princeton)XAGE3
Genetics Home Reference (NIH)XAGE3
Genomic and cartography
GoldenPath hg38 (UCSC)XAGE3  -     chrX:52862529-52867301 -  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XAGE3  -     Xp11.22   [Description]    (hg19-Feb_2009)
EnsemblXAGE3 - Xp11.22 [CytoView hg19]  XAGE3 - Xp11.22 [CytoView hg38]
Mapping of homologs : NCBIXAGE3 [Mapview hg19]  XAGE3 [Mapview hg38]
OMIM300740   
Gene and transcription
Genbank (Entrez)AF318372 AJ318881 BC062680 HQ447537
RefSeq transcript (Entrez)NM_130776 NM_133179
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XAGE3
Cluster EST : UnigeneHs.43879 [ NCBI ]
CGAP (NCI)Hs.43879
Alternative Splicing GalleryENSG00000171402
Gene ExpressionXAGE3 [ NCBI-GEO ]   XAGE3 [ EBI - ARRAY_EXPRESS ]   XAGE3 [ SEEK ]   XAGE3 [ MEM ]
Gene Expression Viewer (FireBrowse)XAGE3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170626
GTEX Portal (Tissue expression)XAGE3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WTP9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WTP9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WTP9
Splice isoforms : SwissVarQ8WTP9
PhosPhoSitePlusQ8WTP9
Domains : Interpro (EBI)GAGE    GAGE_fam   
Domain families : Pfam (Sanger)GAGE (PF05831)   
Domain families : Pfam (NCBI)pfam05831   
Domain families : Smart (EMBL)GAGE (SM01379)  
Conserved Domain (NCBI)XAGE3
DMDM Disease mutations170626
Blocks (Seattle)XAGE3
SuperfamilyQ8WTP9
Human Protein AtlasENSG00000171402
Peptide AtlasQ8WTP9
HPRD06676
IPIIPI00102796   
Protein Interaction databases
DIP (DOE-UCLA)Q8WTP9
IntAct (EBI)Q8WTP9
FunCoupENSG00000171402
BioGRIDXAGE3
STRING (EMBL)XAGE3
ZODIACXAGE3
Ontologies - Pathways
QuickGOQ8WTP9
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkXAGE3
Atlas of Cancer Signalling NetworkXAGE3
Wikipedia pathwaysXAGE3
Orthology - Evolution
OrthoDB170626
GeneTree (enSembl)ENSG00000171402
Phylogenetic Trees/Animal Genes : TreeFamXAGE3
HOVERGENQ8WTP9
HOGENOMQ8WTP9
Homologs : HomoloGeneXAGE3
Homology/Alignments : Family Browser (UCSC)XAGE3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXAGE3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XAGE3
dbVarXAGE3
ClinVarXAGE3
1000_GenomesXAGE3 
Exome Variant ServerXAGE3
ExAC (Exome Aggregation Consortium)XAGE3 (select the gene name)
Genetic variants : HAPMAP170626
Genomic Variants (DGV)XAGE3 [DGVbeta]
DECIPHERXAGE3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisXAGE3 
Mutations
ICGC Data PortalXAGE3 
TCGA Data PortalXAGE3 
Broad Tumor PortalXAGE3
OASIS PortalXAGE3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICXAGE3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDXAGE3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch XAGE3
DgiDB (Drug Gene Interaction Database)XAGE3
DoCM (Curated mutations)XAGE3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XAGE3 (select a term)
intoGenXAGE3
Cancer3DXAGE3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300740   
Orphanet
MedgenXAGE3
Genetic Testing Registry XAGE3
NextProtQ8WTP9 [Medical]
TSGene170626
GENETestsXAGE3
Target ValidationXAGE3
Huge Navigator XAGE3 [HugePedia]
snp3D : Map Gene to Disease170626
BioCentury BCIQXAGE3
ClinGenXAGE3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD170626
Chemical/Pharm GKB GenePA33376
Clinical trialXAGE3
Miscellaneous
canSAR (ICR)XAGE3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXAGE3
EVEXXAGE3
GoPubMedXAGE3
iHOPXAGE3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:38:29 CEST 2017

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