Atlas of Genetics and Cytogenetics in Oncology and Haematology


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XAGE5 (X antigen family member 5)

Identity

Alias_namesmember 5
GAGED5
Alias_symbol (synonym)XAGE-5
CT12.5
Other alias
HGNC (Hugo) XAGE5
LocusID (NCBI) 170627
Atlas_Id 43020
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 52812204 and ends at 52818298 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XAGE5   30930
Cards
Entrez_Gene (NCBI)XAGE5  170627  X antigen family member 5
AliasesCT12.5; GAGED5; XAGE-5
GeneCards (Weizmann)XAGE5
Ensembl hg19 (Hinxton)ENSG00000171405 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171405 [Gene_View]  chrX:52812204-52818298 [Contig_View]  XAGE5 [Vega]
ICGC DataPortalENSG00000171405
TCGA cBioPortalXAGE5
AceView (NCBI)XAGE5
Genatlas (Paris)XAGE5
WikiGenes170627
SOURCE (Princeton)XAGE5
Genetics Home Reference (NIH)XAGE5
Genomic and cartography
GoldenPath hg38 (UCSC)XAGE5  -     chrX:52812204-52818298 +  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XAGE5  -     Xp11.22   [Description]    (hg19-Feb_2009)
EnsemblXAGE5 - Xp11.22 [CytoView hg19]  XAGE5 - Xp11.22 [CytoView hg38]
Mapping of homologs : NCBIXAGE5 [Mapview hg19]  XAGE5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC069129 BC103962 BC103963 BC103964
RefSeq transcript (Entrez)NM_130775
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XAGE5
Cluster EST : UnigeneHs.356874 [ NCBI ]
CGAP (NCI)Hs.356874
Alternative Splicing GalleryENSG00000171405
Gene ExpressionXAGE5 [ NCBI-GEO ]   XAGE5 [ EBI - ARRAY_EXPRESS ]   XAGE5 [ SEEK ]   XAGE5 [ MEM ]
Gene Expression Viewer (FireBrowse)XAGE5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170627
GTEX Portal (Tissue expression)XAGE5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWM1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWM1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWM1
Splice isoforms : SwissVarQ8WWM1
PhosPhoSitePlusQ8WWM1
Domains : Interpro (EBI)GAGE    GAGE_fam   
Domain families : Pfam (Sanger)GAGE (PF05831)   
Domain families : Pfam (NCBI)pfam05831   
Domain families : Smart (EMBL)GAGE (SM01379)  
Conserved Domain (NCBI)XAGE5
DMDM Disease mutations170627
Blocks (Seattle)XAGE5
SuperfamilyQ8WWM1
Human Protein AtlasENSG00000171405
Peptide AtlasQ8WWM1
HPRD06754
IPIIPI00103369   IPI00651675   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWM1
IntAct (EBI)Q8WWM1
FunCoupENSG00000171405
BioGRIDXAGE5
STRING (EMBL)XAGE5
ZODIACXAGE5
Ontologies - Pathways
QuickGOQ8WWM1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkXAGE5
Atlas of Cancer Signalling NetworkXAGE5
Wikipedia pathwaysXAGE5
Orthology - Evolution
OrthoDB170627
GeneTree (enSembl)ENSG00000171405
Phylogenetic Trees/Animal Genes : TreeFamXAGE5
HOVERGENQ8WWM1
HOGENOMQ8WWM1
Homologs : HomoloGeneXAGE5
Homology/Alignments : Family Browser (UCSC)XAGE5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXAGE5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XAGE5
dbVarXAGE5
ClinVarXAGE5
1000_GenomesXAGE5 
Exome Variant ServerXAGE5
ExAC (Exome Aggregation Consortium)XAGE5 (select the gene name)
Genetic variants : HAPMAP170627
Genomic Variants (DGV)XAGE5 [DGVbeta]
DECIPHERXAGE5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisXAGE5 
Mutations
ICGC Data PortalXAGE5 
TCGA Data PortalXAGE5 
Broad Tumor PortalXAGE5
OASIS PortalXAGE5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICXAGE5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDXAGE5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch XAGE5
DgiDB (Drug Gene Interaction Database)XAGE5
DoCM (Curated mutations)XAGE5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XAGE5 (select a term)
intoGenXAGE5
Cancer3DXAGE5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenXAGE5
Genetic Testing Registry XAGE5
NextProtQ8WWM1 [Medical]
TSGene170627
GENETestsXAGE5
Target ValidationXAGE5
Huge Navigator XAGE5 [HugePedia]
snp3D : Map Gene to Disease170627
BioCentury BCIQXAGE5
ClinGenXAGE5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD170627
Chemical/Pharm GKB GenePA134961730
Clinical trialXAGE5
Miscellaneous
canSAR (ICR)XAGE5 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXAGE5
EVEXXAGE5
GoPubMedXAGE5
iHOPXAGE5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 13:03:01 CEST 2017

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