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XG (Xg blood group)

Identity

Alias_namesPBDX
Xg blood group (pseudoautosomal boundary-divided on the X chromosome)
Other alias
HGNC (Hugo) XG
LocusID (NCBI) 7499
Atlas_Id 75778
Location Xp22.33  [Link to chromosome band Xp22]
Location_base_pair Starts at 2752052 and ends at 2816501 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
XG (Xp22.33) / PGM1 (1p31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XG   12806
LRG (Locus Reference Genomic)LRG_805
Cards
Entrez_Gene (NCBI)XG  7499  Xg blood group
AliasesPBDX
GeneCards (Weizmann)XG
Ensembl hg19 (Hinxton)ENSG00000124343 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124343 [Gene_View]  chrX:2752052-2816501 [Contig_View]  XG [Vega]
ICGC DataPortalENSG00000124343
TCGA cBioPortalXG
AceView (NCBI)XG
Genatlas (Paris)XG
WikiGenes7499
SOURCE (Princeton)XG
Genetics Home Reference (NIH)XG
Genomic and cartography
GoldenPath hg38 (UCSC)XG  -     chrX:2752052-2816501 +  Xp22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XG  -     Xp22.33   [Description]    (hg19-Feb_2009)
EnsemblXG - Xp22.33 [CytoView hg19]  XG - Xp22.33 [CytoView hg38]
Mapping of homologs : NCBIXG [Mapview hg19]  XG [Mapview hg38]
OMIM300879   
Gene and transcription
Genbank (Entrez)AF380356 AF534880 AK304164 BC100764 BC100765
RefSeq transcript (Entrez)NM_001141919 NM_001141920 NM_175569
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XG
Cluster EST : UnigeneHs.179675 [ NCBI ]
CGAP (NCI)Hs.179675
Alternative Splicing GalleryENSG00000124343
Gene ExpressionXG [ NCBI-GEO ]   XG [ EBI - ARRAY_EXPRESS ]   XG [ SEEK ]   XG [ MEM ]
Gene Expression Viewer (FireBrowse)XG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7499
GTEX Portal (Tissue expression)XG
Human Protein AtlasENSG00000124343-XG [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP55808   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]NextProtP55808  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP55808
Splice isoforms : SwissVarP55808
PhosPhoSitePlusP55808
Domains : Interpro (EBI)CD99L2   
Domain families : Pfam (Sanger)CD99L2 (PF12301)   
Domain families : Pfam (NCBI)pfam12301   
Conserved Domain (NCBI)XG
DMDM Disease mutations7499
Blocks (Seattle)XG
SuperfamilyP55808
Human Protein Atlas [tissue]ENSG00000124343-XG [tissue]
Peptide AtlasP55808
HPRD02443
IPIIPI00844291   IPI00915408   IPI00026514   IPI01010572   IPI00973865   
Protein Interaction databases
DIP (DOE-UCLA)P55808
IntAct (EBI)P55808
FunCoupENSG00000124343
BioGRIDXG
STRING (EMBL)XG
ZODIACXG
Ontologies - Pathways
QuickGOP55808
Ontology : AmiGOmolecular_function  integral component of plasma membrane  biological_process  
Ontology : EGO-EBImolecular_function  integral component of plasma membrane  biological_process  
NDEx NetworkXG
Atlas of Cancer Signalling NetworkXG
Wikipedia pathwaysXG
Orthology - Evolution
OrthoDB7499
GeneTree (enSembl)ENSG00000124343
Phylogenetic Trees/Animal Genes : TreeFamXG
HOVERGENP55808
HOGENOMP55808
Homologs : HomoloGeneXG
Homology/Alignments : Family Browser (UCSC)XG
Gene fusions - Rearrangements
Fusion: Tumor Portal XG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XG
dbVarXG
ClinVarXG
1000_GenomesXG 
Exome Variant ServerXG
ExAC (Exome Aggregation Consortium)ENSG00000124343
GNOMAD BrowserENSG00000124343
Genetic variants : HAPMAP7499
Genomic Variants (DGV)XG [DGVbeta]
DECIPHERXG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisXG 
Mutations
ICGC Data PortalXG 
TCGA Data PortalXG 
Broad Tumor PortalXG
OASIS PortalXG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICXG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDXG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch XG
DgiDB (Drug Gene Interaction Database)XG
DoCM (Curated mutations)XG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XG (select a term)
intoGenXG
Cancer3DXG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300879   
Orphanet
MedgenXG
Genetic Testing Registry XG
NextProtP55808 [Medical]
TSGene7499
GENETestsXG
Target ValidationXG
Huge Navigator XG [HugePedia]
snp3D : Map Gene to Disease7499
BioCentury BCIQXG
ClinGenXG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7499
Chemical/Pharm GKB GenePA37405
Clinical trialXG
Miscellaneous
canSAR (ICR)XG (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXG
EVEXXG
GoPubMedXG
iHOPXG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:35:57 CET 2017

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