Atlas of Genetics and Cytogenetics in Oncology and Haematology


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XIRP1 (xin actin binding repeat containing 1)

Identity

Alias_namesCMYA1
cardiomyopathy associated 1
Alias_symbol (synonym)DKFZp451D042
Xin
Other alias
HGNC (Hugo) XIRP1
LocusID (NCBI) 165904
Atlas_Id 50564
Location 3p22.2  [Link to chromosome band 3p22]
Location_base_pair Starts at 39183215 and ends at 39192596 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
XIRP1 (3p22.2) / IFT88 (13q12.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XIRP1   14301
Cards
Entrez_Gene (NCBI)XIRP1  165904  xin actin binding repeat containing 1
AliasesCMYA1; Xin
GeneCards (Weizmann)XIRP1
Ensembl hg19 (Hinxton)ENSG00000168334 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168334 [Gene_View]  chr3:39183215-39192596 [Contig_View]  XIRP1 [Vega]
ICGC DataPortalENSG00000168334
TCGA cBioPortalXIRP1
AceView (NCBI)XIRP1
Genatlas (Paris)XIRP1
WikiGenes165904
SOURCE (Princeton)XIRP1
Genetics Home Reference (NIH)XIRP1
Genomic and cartography
GoldenPath hg38 (UCSC)XIRP1  -     chr3:39183215-39192596 -  3p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XIRP1  -     3p22.2   [Description]    (hg19-Feb_2009)
EnsemblXIRP1 - 3p22.2 [CytoView hg19]  XIRP1 - 3p22.2 [CytoView hg38]
Mapping of homologs : NCBIXIRP1 [Mapview hg19]  XIRP1 [Mapview hg38]
OMIM609777   
Gene and transcription
Genbank (Entrez)AJ271461 AJ626899 AJ626900 AK095941 AK096421
RefSeq transcript (Entrez)NM_001198621 NM_194293
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XIRP1
Cluster EST : UnigeneHs.737550 [ NCBI ]
CGAP (NCI)Hs.737550
Alternative Splicing GalleryENSG00000168334
Gene ExpressionXIRP1 [ NCBI-GEO ]   XIRP1 [ EBI - ARRAY_EXPRESS ]   XIRP1 [ SEEK ]   XIRP1 [ MEM ]
Gene Expression Viewer (FireBrowse)XIRP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)165904
GTEX Portal (Tissue expression)XIRP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ702N8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ702N8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ702N8
Splice isoforms : SwissVarQ702N8
PhosPhoSitePlusQ702N8
Domaine pattern : Prosite (Expaxy)XIN (PS51389)   
Domains : Interpro (EBI)Actin-binding_Xin_repeat    XIRP1/XIRP2   
Domain families : Pfam (Sanger)Xin (PF08043)   
Domain families : Pfam (NCBI)pfam08043   
Conserved Domain (NCBI)XIRP1
DMDM Disease mutations165904
Blocks (Seattle)XIRP1
SuperfamilyQ702N8
Human Protein AtlasENSG00000168334
Peptide AtlasQ702N8
HPRD16727
IPIIPI00794464   IPI00793675   IPI00794625   
Protein Interaction databases
DIP (DOE-UCLA)Q702N8
IntAct (EBI)Q702N8
FunCoupENSG00000168334
BioGRIDXIRP1
STRING (EMBL)XIRP1
ZODIACXIRP1
Ontologies - Pathways
QuickGOQ702N8
Ontology : AmiGORNA binding  actin binding  protein binding  heart development  actin cytoskeleton organization  cell junction  
Ontology : EGO-EBIRNA binding  actin binding  protein binding  heart development  actin cytoskeleton organization  cell junction  
NDEx NetworkXIRP1
Atlas of Cancer Signalling NetworkXIRP1
Wikipedia pathwaysXIRP1
Orthology - Evolution
OrthoDB165904
GeneTree (enSembl)ENSG00000168334
Phylogenetic Trees/Animal Genes : TreeFamXIRP1
HOVERGENQ702N8
HOGENOMQ702N8
Homologs : HomoloGeneXIRP1
Homology/Alignments : Family Browser (UCSC)XIRP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXIRP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XIRP1
dbVarXIRP1
ClinVarXIRP1
1000_GenomesXIRP1 
Exome Variant ServerXIRP1
ExAC (Exome Aggregation Consortium)XIRP1 (select the gene name)
Genetic variants : HAPMAP165904
Genomic Variants (DGV)XIRP1 [DGVbeta]
DECIPHERXIRP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisXIRP1 
Mutations
ICGC Data PortalXIRP1 
TCGA Data PortalXIRP1 
Broad Tumor PortalXIRP1
OASIS PortalXIRP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICXIRP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDXIRP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch XIRP1
DgiDB (Drug Gene Interaction Database)XIRP1
DoCM (Curated mutations)XIRP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XIRP1 (select a term)
intoGenXIRP1
Cancer3DXIRP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609777   
Orphanet
MedgenXIRP1
Genetic Testing Registry XIRP1
NextProtQ702N8 [Medical]
TSGene165904
GENETestsXIRP1
Target ValidationXIRP1
Huge Navigator XIRP1 [HugePedia]
snp3D : Map Gene to Disease165904
BioCentury BCIQXIRP1
ClinGenXIRP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD165904
Chemical/Pharm GKB GenePA162409336
Clinical trialXIRP1
Miscellaneous
canSAR (ICR)XIRP1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXIRP1
EVEXXIRP1
GoPubMedXIRP1
iHOPXIRP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:03:02 CEST 2017

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