Atlas of Genetics and Cytogenetics in Oncology and Haematology


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X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

XIST (X inactive specific transcript)

Identity

Alias (NCBI)DXS1089
DXS399E
LINC00001
NCRNA00001
SXI1
swd66
HGNC (Hugo) XIST
HGNC Alias symbNCRNA00001
DXS1089
swd66
LINC00001
HGNC Alias namelong intergenic non-protein coding RNA 1
HGNC Previous nameDXS399E
HGNC Previous nameX (inactive)-specific transcript
 X (inactive)-specific transcript (non-protein coding)
 X inactive specific transcript (non-protein coding)
LocusID (NCBI) 7503
Atlas_Id 45591
Location Xq13.2  [Link to chromosome band Xq13]
Location_base_pair Starts at 73820651 and ends at 73852753 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACTR3 (2q14.1) / XIST (Xq13.2)RPS21 (20q13.33) / XIST (Xq13.2)SDK1 (7p22.2) / XIST (Xq13.2)
SPRR1B (1q21.3) / XIST (Xq13.2)XIST (Xq13.2) / COPB2 (3q23)XIST (Xq13.2) / MALAT1 (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)XIST   12810
Cards
Entrez_Gene (NCBI)XIST  7503  X inactive specific transcript
AliasesDXS1089; DXS399E; LINC00001; NCRNA00001; 
SXI1; swd66
GeneCards (Weizmann)XIST
Ensembl hg19 (Hinxton)ENSG00000229807 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229807 [Gene_View]  ENSG00000229807 [Sequence]  chrX:73820651-73852753 [Contig_View]  XIST [Vega]
ICGC DataPortalENSG00000229807
TCGA cBioPortalXIST
AceView (NCBI)XIST
Genatlas (Paris)XIST
WikiGenes7503
SOURCE (Princeton)XIST
Genetics Home Reference (NIH)XIST
Genomic and cartography
GoldenPath hg38 (UCSC)XIST  -     chrX:73820651-73852753 -  Xq13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XIST  -     Xq13.2   [Description]    (hg19-Feb_2009)
GoldenPathXIST - Xq13.2 [CytoView hg19]  XIST - Xq13.2 [CytoView hg38]
ImmunoBaseENSG00000229807
genome Data Viewer NCBIXIST [Mapview hg19]  
OMIM300087   314670   
Gene and transcription
Genbank (Entrez)AI640908 AK025198 AK054860 AK295558 BX648323
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XIST
Alternative Splicing GalleryENSG00000229807
Gene ExpressionXIST [ NCBI-GEO ]   XIST [ EBI - ARRAY_EXPRESS ]   XIST [ SEEK ]   XIST [ MEM ]
Gene Expression Viewer (FireBrowse)XIST [ Firebrowse - Broad ]
GenevisibleExpression of XIST in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7503
GTEX Portal (Tissue expression)XIST
Human Protein AtlasENSG00000229807-XIST [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)XIST
DMDM Disease mutations7503
Blocks (Seattle)XIST
Human Protein Atlas [tissue]ENSG00000229807-XIST [tissue]
Protein Interaction databases
FunCoupENSG00000229807
BioGRIDXIST
STRING (EMBL)XIST
ZODIACXIST
Ontologies - Pathways
Huge Navigator XIST [HugePedia]
snp3D : Map Gene to Disease7503
BioCentury BCIQXIST
ClinGenXIST (curated)
Clinical trials, drugs, therapy
Protein Interactions : CTD7503
Pharm GKB GenePA37409
Clinical trialXIST
Miscellaneous
canSAR (ICR)XIST (select the gene name)
HarmonizomeXIST
DataMed IndexXIST
Probes
Litterature
PubMed125 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXIST
EVEXXIST
GoPubMedXIST
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 14 14:39:16 CEST 2020

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