Atlas of Genetics and Cytogenetics in Oncology and Haematology


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X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

XIST (X inactive specific transcript (non-protein coding))

Identity

Alias_namesDXS399E
X (inactive)-specific transcript
X (inactive)-specific transcript (non-protein coding)
Alias_symbol (synonym)NCRNA00001
DXS1089
swd66
LINC00001
Other aliasSXI1
HGNC (Hugo) XIST
LocusID (NCBI) 7503
Atlas_Id 45591
Location Xq13.2  [Link to chromosome band Xq13]
Location_base_pair Starts at 73040486 and ends at 73072588 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ACTR3 (2q14.1) / XIST (Xq13.2)RPS21 (20q13.33) / XIST (Xq13.2)SDK1 (7p22.2) / XIST (Xq13.2)
SPRR1B (1q21.3) / XIST (Xq13.2)XIST (Xq13.2) / COPB2 (3q23)XIST (Xq13.2) / MALAT1 (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XIST   12810
Cards
Entrez_Gene (NCBI)XIST  7503  X inactive specific transcript (non-protein coding)
AliasesDXS1089; DXS399E; LINC00001; NCRNA00001; 
SXI1; swd66
GeneCards (Weizmann)XIST
Ensembl hg19 (Hinxton)ENSG00000229807 [Gene_View]  chrX:73040486-73072588 [Contig_View]  XIST [Vega]
Ensembl hg38 (Hinxton)ENSG00000229807 [Gene_View]  chrX:73040486-73072588 [Contig_View]  XIST [Vega]
ICGC DataPortalENSG00000229807
TCGA cBioPortalXIST
AceView (NCBI)XIST
Genatlas (Paris)XIST
WikiGenes7503
SOURCE (Princeton)XIST
Genetics Home Reference (NIH)XIST
Genomic and cartography
GoldenPath hg19 (UCSC)XIST  -     chrX:73040486-73072588 -  Xq13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)XIST  -     Xq13.2   [Description]    (hg38-Dec_2013)
EnsemblXIST - Xq13.2 [CytoView hg19]  XIST - Xq13.2 [CytoView hg38]
Mapping of homologs : NCBIXIST [Mapview hg19]  XIST [Mapview hg38]
OMIM300087   314670   
Gene and transcription
Genbank (Entrez)AI640908 AK025198 AK054860 AK295558 BX648323
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_016172 NT_011651 NW_004929443
Consensus coding sequences : CCDS (NCBI)XIST
Cluster EST : UnigeneHs.655450 [ NCBI ]
CGAP (NCI)Hs.655450
Alternative Splicing GalleryENSG00000229807
Gene ExpressionXIST [ NCBI-GEO ]   XIST [ EBI - ARRAY_EXPRESS ]   XIST [ SEEK ]   XIST [ MEM ]
Gene Expression Viewer (FireBrowse)XIST [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)7503
GTEX Portal (Tissue expression)XIST
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)XIST
DMDM Disease mutations7503
Blocks (Seattle)XIST
Human Protein AtlasENSG00000229807
Protein Interaction databases
FunCoupENSG00000229807
BioGRIDXIST
STRING (EMBL)XIST
ZODIACXIST
Ontologies - Pathways
Huge Navigator XIST [HugePedia]
snp3D : Map Gene to Disease7503
BioCentury BCIQXIST
ClinGenXIST (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7503
Chemical/Pharm GKB GenePA37409
Clinical trialXIST
Miscellaneous
canSAR (ICR)XIST (select the gene name)
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXIST
EVEXXIST
GoPubMedXIST
iHOPXIST
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:25:12 CEST 2017

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