Atlas of Genetics and Cytogenetics in Oncology and Haematology


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XK (X-linked Kx blood group)

Identity

Alias_namesNA
NAC
Kell blood group precursor (McLeod phenotype)
XK, Kell blood group complex subunit (McLeod syndrome)
neuroacanthocytosis
neurocanthocytosis
Alias_symbol (synonym)XKR1
Kx
X1k
HGNC (Hugo) XK
LocusID (NCBI) 7504
Atlas_Id 75781
Location Xp21.1  [Link to chromosome band Xp21]
Location_base_pair Starts at 37545133 and ends at 37591383 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XK   12811
LRG (Locus Reference Genomic)LRG_812
Cards
Entrez_Gene (NCBI)XK  7504  X-linked Kx blood group
AliasesKX; MCLDS; NA; NAC; 
X1k; XKR1
GeneCards (Weizmann)XK
Ensembl hg19 (Hinxton)ENSG00000047597 [Gene_View]  chrX:37545133-37591383 [Contig_View]  XK [Vega]
Ensembl hg38 (Hinxton)ENSG00000047597 [Gene_View]  chrX:37545133-37591383 [Contig_View]  XK [Vega]
ICGC DataPortalENSG00000047597
TCGA cBioPortalXK
AceView (NCBI)XK
Genatlas (Paris)XK
WikiGenes7504
SOURCE (Princeton)XK
Genetics Home Reference (NIH)XK
Genomic and cartography
GoldenPath hg19 (UCSC)XK  -     chrX:37545133-37591383 +  Xp21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)XK  -     Xp21.1   [Description]    (hg38-Dec_2013)
EnsemblXK - Xp21.1 [CytoView hg19]  XK - Xp21.1 [CytoView hg38]
Mapping of homologs : NCBIXK [Mapview hg19]  XK [Mapview hg38]
OMIM300842   314850   
Gene and transcription
Genbank (Entrez)AY534238 BC036019 Z32684
RefSeq transcript (Entrez)NM_021083
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_007473 NT_079573 NW_004929439
Consensus coding sequences : CCDS (NCBI)XK
Cluster EST : UnigeneHs.78919 [ NCBI ]
CGAP (NCI)Hs.78919
Alternative Splicing GalleryENSG00000047597
Gene ExpressionXK [ NCBI-GEO ]   XK [ EBI - ARRAY_EXPRESS ]   XK [ SEEK ]   XK [ MEM ]
Gene Expression Viewer (FireBrowse)XK [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7504
GTEX Portal (Tissue expression)XK
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51811   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51811  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51811
Splice isoforms : SwissVarP51811
PhosPhoSitePlusP51811
Domains : Interpro (EBI)Transport_prot_XK   
Domain families : Pfam (Sanger)XK-related (PF09815)   
Domain families : Pfam (NCBI)pfam09815   
Conserved Domain (NCBI)XK
DMDM Disease mutations7504
Blocks (Seattle)XK
SuperfamilyP51811
Human Protein AtlasENSG00000047597
Peptide AtlasP51811
HPRD02444
IPIIPI00020896   
Protein Interaction databases
DIP (DOE-UCLA)P51811
IntAct (EBI)P51811
FunCoupENSG00000047597
BioGRIDXK
STRING (EMBL)XK
ZODIACXK
Ontologies - Pathways
QuickGOP51811
Ontology : AmiGOtransporter activity  protein binding  cell  transport  amino acid transport  cellular calcium ion homeostasis  regulation of cell size  cellular magnesium ion homeostasis  integral component of membrane  regulation of axon diameter  myelination  skeletal muscle fiber development  
Ontology : EGO-EBItransporter activity  protein binding  cell  transport  amino acid transport  cellular calcium ion homeostasis  regulation of cell size  cellular magnesium ion homeostasis  integral component of membrane  regulation of axon diameter  myelination  skeletal muscle fiber development  
NDEx NetworkXK
Atlas of Cancer Signalling NetworkXK
Wikipedia pathwaysXK
Orthology - Evolution
OrthoDB7504
GeneTree (enSembl)ENSG00000047597
Phylogenetic Trees/Animal Genes : TreeFamXK
HOVERGENP51811
HOGENOMP51811
Homologs : HomoloGeneXK
Homology/Alignments : Family Browser (UCSC)XK
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXK [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XK
dbVarXK
ClinVarXK
1000_GenomesXK 
Exome Variant ServerXK
ExAC (Exome Aggregation Consortium)XK (select the gene name)
Genetic variants : HAPMAP7504
Genomic Variants (DGV)XK [DGVbeta]
DECIPHER (Syndromes)X:37545133-37591383  ENSG00000047597
CONAN: Copy Number AnalysisXK 
Mutations
ICGC Data PortalXK 
TCGA Data PortalXK 
Broad Tumor PortalXK
OASIS PortalXK [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICXK  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDXK
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
BioMutasearch XK
DgiDB (Drug Gene Interaction Database)XK
DoCM (Curated mutations)XK (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XK (select a term)
intoGenXK
Cancer3DXK(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300842    314850   
Orphanet10791   
MedgenXK
Genetic Testing Registry XK
NextProtP51811 [Medical]
TSGene7504
GENETestsXK
Huge Navigator XK [HugePedia]
snp3D : Map Gene to Disease7504
BioCentury BCIQXK
ClinGenXK
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7504
Chemical/Pharm GKB GenePA37410
Clinical trialXK
Miscellaneous
canSAR (ICR)XK (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXK
EVEXXK
GoPubMedXK
iHOPXK
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Dec 29 13:55:04 CET 2016

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