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XKR3 (XK related 3)

Identity

Alias_namesX Kell blood group precursor-related family, member 3
XK, Kell blood group complex subunit-related family, member 3
Alias_symbol (synonym)MGC57211
XTES
Other aliasXRG3
HGNC (Hugo) XKR3
LocusID (NCBI) 150165
Atlas_Id 54786
Location 22q11.1  [Link to chromosome band 22q11]
Location_base_pair Starts at 17264306 and ends at 17302589 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EXOC1 (4q12) / XKR3 (22q11.1)NUP214 (9q34.13) / XKR3 (22q11.1)XKR3 (22q11.1) / NUP214 (9q34.13)
EXOC1 4q12 / XKR3 22q11.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XKR3   28778
Cards
Entrez_Gene (NCBI)XKR3  150165  XK related 3
AliasesXRG3; XTES
GeneCards (Weizmann)XKR3
Ensembl hg19 (Hinxton)ENSG00000172967 [Gene_View]  chr22:17264306-17302589 [Contig_View]  XKR3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000172967 [Gene_View]  chr22:17264306-17302589 [Contig_View]  XKR3 [Vega]
ICGC DataPortalENSG00000172967
TCGA cBioPortalXKR3
AceView (NCBI)XKR3
Genatlas (Paris)XKR3
WikiGenes150165
SOURCE (Princeton)XKR3
Genetics Home Reference (NIH)XKR3
Genomic and cartography
GoldenPath hg19 (UCSC)XKR3  -     chr22:17264306-17302589 -  22q11.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)XKR3  -     22q11.1   [Description]    (hg38-Dec_2013)
EnsemblXKR3 - 22q11.1 [CytoView hg19]  XKR3 - 22q11.1 [CytoView hg38]
Mapping of homologs : NCBIXKR3 [Mapview hg19]  XKR3 [Mapview hg38]
OMIM611674   
Gene and transcription
Genbank (Entrez)AK098608 AY534240 AY989815 BC045548 BC137521
RefSeq transcript (Entrez)NM_001318251 NM_175878
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_187355 NW_004929429
Consensus coding sequences : CCDS (NCBI)XKR3
Cluster EST : UnigeneHs.356069 [ NCBI ]
CGAP (NCI)Hs.356069
Alternative Splicing GalleryENSG00000172967
Gene ExpressionXKR3 [ NCBI-GEO ]   XKR3 [ EBI - ARRAY_EXPRESS ]   XKR3 [ SEEK ]   XKR3 [ MEM ]
Gene Expression Viewer (FireBrowse)XKR3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150165
GTEX Portal (Tissue expression)XKR3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5GH77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5GH77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5GH77
Splice isoforms : SwissVarQ5GH77
PhosPhoSitePlusQ5GH77
Domains : Interpro (EBI)XK_fam   
Domain families : Pfam (Sanger)XK-related (PF09815)   
Domain families : Pfam (NCBI)pfam09815   
Conserved Domain (NCBI)XKR3
DMDM Disease mutations150165
Blocks (Seattle)XKR3
SuperfamilyQ5GH77
Human Protein AtlasENSG00000172967
Peptide AtlasQ5GH77
HPRD14692
IPIIPI00395979   
Protein Interaction databases
DIP (DOE-UCLA)Q5GH77
IntAct (EBI)Q5GH77
FunCoupENSG00000172967
BioGRIDXKR3
STRING (EMBL)XKR3
ZODIACXKR3
Ontologies - Pathways
QuickGOQ5GH77
Ontology : AmiGOplasma membrane  integral component of membrane  
Ontology : EGO-EBIplasma membrane  integral component of membrane  
NDEx NetworkXKR3
Atlas of Cancer Signalling NetworkXKR3
Wikipedia pathwaysXKR3
Orthology - Evolution
OrthoDB150165
GeneTree (enSembl)ENSG00000172967
Phylogenetic Trees/Animal Genes : TreeFamXKR3
HOVERGENQ5GH77
HOGENOMQ5GH77
Homologs : HomoloGeneXKR3
Homology/Alignments : Family Browser (UCSC)XKR3
Gene fusions - Rearrangements
Fusion : MitelmanEXOC1/XKR3 [4q12/22q11.1]  [t(4;22)(q12;q11)]  
Fusion : MitelmanNUP214/XKR3 [9q34.13/22q11.1]  [t(9;22)(q34;q11)]  
Fusion: TCGAEXOC1 4q12 XKR3 22q11.1 OV
Fusion Cancer (Beijing)NUP214 [9q34.13]  -  XKR3 [22q11.1]  [FUSC001410]  [FUSC001410]
Fusion Cancer (Beijing)XKR3 [22q11.1]  -  NUP214 [9q34.13]  [FUSC001412]  [FUSC001412]  [FUSC001412]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXKR3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XKR3
dbVarXKR3
ClinVarXKR3
1000_GenomesXKR3 
Exome Variant ServerXKR3
ExAC (Exome Aggregation Consortium)XKR3 (select the gene name)
Genetic variants : HAPMAP150165
Genomic Variants (DGV)XKR3 [DGVbeta]
DECIPHER (Syndromes)22:17264306-17302589  ENSG00000172967
CONAN: Copy Number AnalysisXKR3 
Mutations
ICGC Data PortalXKR3 
TCGA Data PortalXKR3 
Broad Tumor PortalXKR3
OASIS PortalXKR3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICXKR3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDXKR3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch XKR3
DgiDB (Drug Gene Interaction Database)XKR3
DoCM (Curated mutations)XKR3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XKR3 (select a term)
intoGenXKR3
Cancer3DXKR3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611674   
Orphanet
MedgenXKR3
Genetic Testing Registry XKR3
NextProtQ5GH77 [Medical]
TSGene150165
GENETestsXKR3
Huge Navigator XKR3 [HugePedia]
snp3D : Map Gene to Disease150165
BioCentury BCIQXKR3
ClinGenXKR3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150165
Chemical/Pharm GKB GenePA142670562
Clinical trialXKR3
Miscellaneous
canSAR (ICR)XKR3 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXKR3
EVEXXKR3
GoPubMedXKR3
iHOPXKR3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:34:25 CET 2017

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