Atlas of Genetics and Cytogenetics in Oncology and Haematology


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XKR4 (XK related 4)

Identity

Alias_namesX Kell blood group precursor-related family, member 4
XK, Kell blood group complex subunit-related family, member 4
Alias_symbol (synonym)KIAA1889
Other aliasXRG4
HGNC (Hugo) XKR4
LocusID (NCBI) 114786
Atlas_Id 75782
Location 8q12.1  [Link to chromosome band 8q12]
Location_base_pair Starts at 55102457 and ends at 55526151 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATAD2B (2p24.1) / XKR4 (8q12.1)XKR4 (8q12.1) / DONSON (21q22.11)XKR4 (8q12.1) / KHDRBS3 (8q24.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XKR4   29394
Cards
Entrez_Gene (NCBI)XKR4  114786  XK related 4
AliasesXRG4
GeneCards (Weizmann)XKR4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:55102457-55526151 [Contig_View]  XKR4 [Vega]
TCGA cBioPortalXKR4
AceView (NCBI)XKR4
Genatlas (Paris)XKR4
WikiGenes114786
SOURCE (Princeton)XKR4
Genetics Home Reference (NIH)XKR4
Genomic and cartography
GoldenPath hg38 (UCSC)XKR4  -     chr8:55102457-55526151 +  8q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XKR4  -     8q12.1   [Description]    (hg19-Feb_2009)
EnsemblXKR4 - 8q12.1 [CytoView hg19]  XKR4 - 8q12.1 [CytoView hg38]
Mapping of homologs : NCBIXKR4 [Mapview hg19]  XKR4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB067476 AY534241 BC156155
RefSeq transcript (Entrez)NM_052898
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XKR4
Cluster EST : UnigeneHs.130197 [ NCBI ]
CGAP (NCI)Hs.130197
Gene ExpressionXKR4 [ NCBI-GEO ]   XKR4 [ EBI - ARRAY_EXPRESS ]   XKR4 [ SEEK ]   XKR4 [ MEM ]
Gene Expression Viewer (FireBrowse)XKR4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114786
GTEX Portal (Tissue expression)XKR4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5GH76   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5GH76  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5GH76
Splice isoforms : SwissVarQ5GH76
PhosPhoSitePlusQ5GH76
Domains : Interpro (EBI)XK-rel   
Domain families : Pfam (Sanger)XK-related (PF09815)   
Domain families : Pfam (NCBI)pfam09815   
Conserved Domain (NCBI)XKR4
DMDM Disease mutations114786
Blocks (Seattle)XKR4
SuperfamilyQ5GH76
Peptide AtlasQ5GH76
HPRD17228
IPIIPI00174859   
Protein Interaction databases
DIP (DOE-UCLA)Q5GH76
IntAct (EBI)Q5GH76
BioGRIDXKR4
STRING (EMBL)XKR4
ZODIACXKR4
Ontologies - Pathways
QuickGOQ5GH76
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkXKR4
Atlas of Cancer Signalling NetworkXKR4
Wikipedia pathwaysXKR4
Orthology - Evolution
OrthoDB114786
Phylogenetic Trees/Animal Genes : TreeFamXKR4
HOVERGENQ5GH76
HOGENOMQ5GH76
Homologs : HomoloGeneXKR4
Homology/Alignments : Family Browser (UCSC)XKR4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXKR4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XKR4
dbVarXKR4
ClinVarXKR4
1000_GenomesXKR4 
Exome Variant ServerXKR4
ExAC (Exome Aggregation Consortium)XKR4 (select the gene name)
Genetic variants : HAPMAP114786
Genomic Variants (DGV)XKR4 [DGVbeta]
DECIPHERXKR4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisXKR4 
Mutations
ICGC Data PortalXKR4 
TCGA Data PortalXKR4 
Broad Tumor PortalXKR4
OASIS PortalXKR4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICXKR4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDXKR4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch XKR4
DgiDB (Drug Gene Interaction Database)XKR4
DoCM (Curated mutations)XKR4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XKR4 (select a term)
intoGenXKR4
Cancer3DXKR4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenXKR4
Genetic Testing Registry XKR4
NextProtQ5GH76 [Medical]
TSGene114786
GENETestsXKR4
Target ValidationXKR4
Huge Navigator XKR4 [HugePedia]
snp3D : Map Gene to Disease114786
BioCentury BCIQXKR4
ClinGenXKR4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114786
Chemical/Pharm GKB GenePA142670563
Clinical trialXKR4
Miscellaneous
canSAR (ICR)XKR4 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXKR4
EVEXXKR4
GoPubMedXKR4
iHOPXKR4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:49:11 CEST 2017

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