Atlas of Genetics and Cytogenetics in Oncology and Haematology


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XKR5 (XK related 5)

Identity

Alias_namesX Kell blood group precursor-related family, member 5
XK, Kell blood group complex subunit-related family, member 5
Other aliasHARL2754
UNQ2754
XRG5A
XRG5BM
HGNC (Hugo) XKR5
LocusID (NCBI) 389610
Atlas_Id 75783
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 6808520 and ends at 6835644 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XKR5   20782
Cards
Entrez_Gene (NCBI)XKR5  389610  XK related 5
AliasesHARL2754; UNQ2754; XRG5A; XRG5BM
GeneCards (Weizmann)XKR5
Ensembl hg19 (Hinxton)ENSG00000275591 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000275591 [Gene_View]  chr8:6808520-6835644 [Contig_View]  XKR5 [Vega]
ICGC DataPortalENSG00000275591
TCGA cBioPortalXKR5
AceView (NCBI)XKR5
Genatlas (Paris)XKR5
WikiGenes389610
SOURCE (Princeton)XKR5
Genetics Home Reference (NIH)XKR5
Genomic and cartography
GoldenPath hg38 (UCSC)XKR5  -     chr8:6808520-6835644 -  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XKR5  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblXKR5 - 8p23.1 [CytoView hg19]  XKR5 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIXKR5 [Mapview hg19]  XKR5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY358489 AY534242 AY534243
RefSeq transcript (Entrez)NM_001289973 NM_207411
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XKR5
Cluster EST : UnigeneHs.558840 [ NCBI ]
CGAP (NCI)Hs.558840
Alternative Splicing GalleryENSG00000275591
Gene ExpressionXKR5 [ NCBI-GEO ]   XKR5 [ EBI - ARRAY_EXPRESS ]   XKR5 [ SEEK ]   XKR5 [ MEM ]
Gene Expression Viewer (FireBrowse)XKR5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389610
GTEX Portal (Tissue expression)XKR5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UX68   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UX68  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UX68
Splice isoforms : SwissVarQ6UX68
PhosPhoSitePlusQ6UX68
Domains : Interpro (EBI)XK-rel   
Domain families : Pfam (Sanger)XK-related (PF09815)   
Domain families : Pfam (NCBI)pfam09815   
Conserved Domain (NCBI)XKR5
DMDM Disease mutations389610
Blocks (Seattle)XKR5
SuperfamilyQ6UX68
Human Protein AtlasENSG00000275591
Peptide AtlasQ6UX68
HPRD18308
IPIIPI00410477   IPI00651718   
Protein Interaction databases
DIP (DOE-UCLA)Q6UX68
IntAct (EBI)Q6UX68
FunCoupENSG00000275591
BioGRIDXKR5
STRING (EMBL)XKR5
ZODIACXKR5
Ontologies - Pathways
QuickGOQ6UX68
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkXKR5
Atlas of Cancer Signalling NetworkXKR5
Wikipedia pathwaysXKR5
Orthology - Evolution
OrthoDB389610
GeneTree (enSembl)ENSG00000275591
Phylogenetic Trees/Animal Genes : TreeFamXKR5
HOVERGENQ6UX68
HOGENOMQ6UX68
Homologs : HomoloGeneXKR5
Homology/Alignments : Family Browser (UCSC)XKR5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXKR5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XKR5
dbVarXKR5
ClinVarXKR5
1000_GenomesXKR5 
Exome Variant ServerXKR5
ExAC (Exome Aggregation Consortium)XKR5 (select the gene name)
Genetic variants : HAPMAP389610
Genomic Variants (DGV)XKR5 [DGVbeta]
DECIPHERXKR5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisXKR5 
Mutations
ICGC Data PortalXKR5 
TCGA Data PortalXKR5 
Broad Tumor PortalXKR5
OASIS PortalXKR5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDXKR5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch XKR5
DgiDB (Drug Gene Interaction Database)XKR5
DoCM (Curated mutations)XKR5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XKR5 (select a term)
intoGenXKR5
Cancer3DXKR5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenXKR5
Genetic Testing Registry XKR5
NextProtQ6UX68 [Medical]
TSGene389610
GENETestsXKR5
Target ValidationXKR5
Huge Navigator XKR5 [HugePedia]
snp3D : Map Gene to Disease389610
BioCentury BCIQXKR5
ClinGenXKR5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389610
Chemical/Pharm GKB GenePA142670564
Clinical trialXKR5
Miscellaneous
canSAR (ICR)XKR5 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXKR5
EVEXXKR5
GoPubMedXKR5
iHOPXKR5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:49:11 CEST 2017

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