Atlas of Genetics and Cytogenetics in Oncology and Haematology


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X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

XKR6 (XK, Kell blood group complex subunit-related family, member 6)

Identity

Alias_namesC8orf7
C8orf21
C8orf5
chromosome 8 open reading frame 7
chromosome 8 open reading frame 21
X Kell blood group precursor-related family, member 6
chromosome 8 open reading frame 5
XK, Kell blood group complex subunit-related family, member 6
Other aliasXRG6
HGNC (Hugo) XKR6
LocusID (NCBI) 286046
Atlas_Id 75784
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 10753657 and ends at 11058875 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CEP295 (11q21) / XKR6 (8p23.1)SMC5 (9q21.12) / XKR6 (8p23.1)XKR6 (8p23.1) / XKR6 (8p23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XKR6   27806
Cards
Entrez_Gene (NCBI)XKR6  286046  XK, Kell blood group complex subunit-related family, member 6
AliasesC8orf21; C8orf5; C8orf7; XRG6
GeneCards (Weizmann)XKR6
Ensembl hg19 (Hinxton)ENSG00000171044 [Gene_View]  chr8:10753657-11058875 [Contig_View]  XKR6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000171044 [Gene_View]  chr8:10753657-11058875 [Contig_View]  XKR6 [Vega]
ICGC DataPortalENSG00000171044
TCGA cBioPortalXKR6
AceView (NCBI)XKR6
Genatlas (Paris)XKR6
WikiGenes286046
SOURCE (Princeton)XKR6
Genetics Home Reference (NIH)XKR6
Genomic and cartography
GoldenPath hg19 (UCSC)XKR6  -     chr8:10753657-11058875 -  8p23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)XKR6  -     8p23.1   [Description]    (hg38-Dec_2013)
EnsemblXKR6 - 8p23.1 [CytoView hg19]  XKR6 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIXKR6 [Mapview hg19]  XKR6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB073660 AJ301560 AJ305312 AK056119 AY534244
RefSeq transcript (Entrez)NM_173683
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_077531 NW_004929336
Consensus coding sequences : CCDS (NCBI)XKR6
Cluster EST : UnigeneHs.666146 [ NCBI ]
CGAP (NCI)Hs.666146
Alternative Splicing GalleryENSG00000171044
Gene ExpressionXKR6 [ NCBI-GEO ]   XKR6 [ EBI - ARRAY_EXPRESS ]   XKR6 [ SEEK ]   XKR6 [ MEM ]
Gene Expression Viewer (FireBrowse)XKR6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286046
GTEX Portal (Tissue expression)XKR6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5GH73   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5GH73  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5GH73
Splice isoforms : SwissVarQ5GH73
PhosPhoSitePlusQ5GH73
Domains : Interpro (EBI)Transport_prot_XK   
Domain families : Pfam (Sanger)XK-related (PF09815)   
Domain families : Pfam (NCBI)pfam09815   
Conserved Domain (NCBI)XKR6
DMDM Disease mutations286046
Blocks (Seattle)XKR6
SuperfamilyQ5GH73
Human Protein AtlasENSG00000171044
Peptide AtlasQ5GH73
HPRD12926
IPIIPI00552082   IPI00797673   IPI00982075   IPI00978937   IPI00064795   
Protein Interaction databases
DIP (DOE-UCLA)Q5GH73
IntAct (EBI)Q5GH73
FunCoupENSG00000171044
BioGRIDXKR6
STRING (EMBL)XKR6
ZODIACXKR6
Ontologies - Pathways
QuickGOQ5GH73
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkXKR6
Atlas of Cancer Signalling NetworkXKR6
Wikipedia pathwaysXKR6
Orthology - Evolution
OrthoDB286046
GeneTree (enSembl)ENSG00000171044
Phylogenetic Trees/Animal Genes : TreeFamXKR6
HOVERGENQ5GH73
HOGENOMQ5GH73
Homologs : HomoloGeneXKR6
Homology/Alignments : Family Browser (UCSC)XKR6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXKR6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XKR6
dbVarXKR6
ClinVarXKR6
1000_GenomesXKR6 
Exome Variant ServerXKR6
ExAC (Exome Aggregation Consortium)XKR6 (select the gene name)
Genetic variants : HAPMAP286046
Genomic Variants (DGV)XKR6 [DGVbeta]
DECIPHER (Syndromes)8:10753657-11058875  ENSG00000171044
CONAN: Copy Number AnalysisXKR6 
Mutations
ICGC Data PortalXKR6 
TCGA Data PortalXKR6 
Broad Tumor PortalXKR6
OASIS PortalXKR6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICXKR6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDXKR6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch XKR6
DgiDB (Drug Gene Interaction Database)XKR6
DoCM (Curated mutations)XKR6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XKR6 (select a term)
intoGenXKR6
Cancer3DXKR6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenXKR6
Genetic Testing Registry XKR6
NextProtQ5GH73 [Medical]
TSGene286046
GENETestsXKR6
Huge Navigator XKR6 [HugePedia]
snp3D : Map Gene to Disease286046
BioCentury BCIQXKR6
ClinGenXKR6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286046
Chemical/Pharm GKB GenePA134922549
Clinical trialXKR6
Miscellaneous
canSAR (ICR)XKR6 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXKR6
EVEXXKR6
GoPubMedXKR6
iHOPXKR6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:51:50 CET 2017

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