Atlas of Genetics and Cytogenetics in Oncology and Haematology


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XKR7 (XK related 7)

Identity

Alias_namesC20orf159
X Kell blood group precursor-related family, member 7
chromosome 20 open reading frame 159
XK, Kell blood group complex subunit-related family, member 7
Alias_symbol (synonym)dJ310O13.4
Other alias
HGNC (Hugo) XKR7
LocusID (NCBI) 343702
Atlas_Id 75785
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 31968002 and ends at 31998453 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ASXL1 (20q11.21) / XKR7 (20q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XKR7   23062
Cards
Entrez_Gene (NCBI)XKR7  343702  XK related 7
AliasesC20orf159; dJ310O13.4
GeneCards (Weizmann)XKR7
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:31968002-31998453 [Contig_View]  XKR7 [Vega]
TCGA cBioPortalXKR7
AceView (NCBI)XKR7
Genatlas (Paris)XKR7
WikiGenes343702
SOURCE (Princeton)XKR7
Genetics Home Reference (NIH)XKR7
Genomic and cartography
GoldenPath hg38 (UCSC)XKR7  -     chr20:31968002-31998453 +  20q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XKR7  -     20q11.21   [Description]    (hg19-Feb_2009)
EnsemblXKR7 - 20q11.21 [CytoView hg19]  XKR7 - 20q11.21 [CytoView hg38]
Mapping of homologs : NCBIXKR7 [Mapview hg19]  XKR7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY534245
RefSeq transcript (Entrez)NM_001011718
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XKR7
Cluster EST : UnigeneHs.666444 [ NCBI ]
CGAP (NCI)Hs.666444
Gene ExpressionXKR7 [ NCBI-GEO ]   XKR7 [ EBI - ARRAY_EXPRESS ]   XKR7 [ SEEK ]   XKR7 [ MEM ]
Gene Expression Viewer (FireBrowse)XKR7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)343702
GTEX Portal (Tissue expression)XKR7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5GH72   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5GH72  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5GH72
Splice isoforms : SwissVarQ5GH72
PhosPhoSitePlusQ5GH72
Domains : Interpro (EBI)XK-rel   
Domain families : Pfam (Sanger)XK-related (PF09815)   
Domain families : Pfam (NCBI)pfam09815   
Conserved Domain (NCBI)XKR7
DMDM Disease mutations343702
Blocks (Seattle)XKR7
SuperfamilyQ5GH72
Peptide AtlasQ5GH72
HPRD17359
IPIIPI00552154   
Protein Interaction databases
DIP (DOE-UCLA)Q5GH72
IntAct (EBI)Q5GH72
BioGRIDXKR7
STRING (EMBL)XKR7
ZODIACXKR7
Ontologies - Pathways
QuickGOQ5GH72
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkXKR7
Atlas of Cancer Signalling NetworkXKR7
Wikipedia pathwaysXKR7
Orthology - Evolution
OrthoDB343702
Phylogenetic Trees/Animal Genes : TreeFamXKR7
HOVERGENQ5GH72
HOGENOMQ5GH72
Homologs : HomoloGeneXKR7
Homology/Alignments : Family Browser (UCSC)XKR7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXKR7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XKR7
dbVarXKR7
ClinVarXKR7
1000_GenomesXKR7 
Exome Variant ServerXKR7
ExAC (Exome Aggregation Consortium)XKR7 (select the gene name)
Genetic variants : HAPMAP343702
Genomic Variants (DGV)XKR7 [DGVbeta]
DECIPHERXKR7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisXKR7 
Mutations
ICGC Data PortalXKR7 
TCGA Data PortalXKR7 
Broad Tumor PortalXKR7
OASIS PortalXKR7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICXKR7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDXKR7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch XKR7
DgiDB (Drug Gene Interaction Database)XKR7
DoCM (Curated mutations)XKR7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XKR7 (select a term)
intoGenXKR7
Cancer3DXKR7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenXKR7
Genetic Testing Registry XKR7
NextProtQ5GH72 [Medical]
TSGene343702
GENETestsXKR7
Target ValidationXKR7
Huge Navigator XKR7 [HugePedia]
snp3D : Map Gene to Disease343702
BioCentury BCIQXKR7
ClinGenXKR7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD343702
Chemical/Pharm GKB GenePA142670565
Clinical trialXKR7
Miscellaneous
canSAR (ICR)XKR7 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXKR7
EVEXXKR7
GoPubMedXKR7
iHOPXKR7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:43:57 CEST 2017

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