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XKR8 (XK related 8)

Identity

Alias_namesX Kell blood group precursor-related family, member 8
XK, Kell blood group complex subunit-related family, member 8
Alias_symbol (synonym)FLJ10307
Other aliasXRG8
hXkr8
HGNC (Hugo) XKR8
LocusID (NCBI) 55113
Atlas_Id 75786
Location 1p35.3  [Link to chromosome band 1p35]
Location_base_pair Starts at 27959462 and ends at 27968096 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XKR8   25508
Cards
Entrez_Gene (NCBI)XKR8  55113  XK related 8
AliasesXRG8; hXkr8
GeneCards (Weizmann)XKR8
Ensembl hg19 (Hinxton)ENSG00000158156 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158156 [Gene_View]  chr1:27959462-27968096 [Contig_View]  XKR8 [Vega]
ICGC DataPortalENSG00000158156
TCGA cBioPortalXKR8
AceView (NCBI)XKR8
Genatlas (Paris)XKR8
WikiGenes55113
SOURCE (Princeton)XKR8
Genetics Home Reference (NIH)XKR8
Genomic and cartography
GoldenPath hg38 (UCSC)XKR8  -     chr1:27959462-27968096 +  1p35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XKR8  -     1p35.3   [Description]    (hg19-Feb_2009)
EnsemblXKR8 - 1p35.3 [CytoView hg19]  XKR8 - 1p35.3 [CytoView hg38]
Mapping of homologs : NCBIXKR8 [Mapview hg19]  XKR8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001169 AK026024 AK054909 AK091615 AY534246
RefSeq transcript (Entrez)NM_018053
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XKR8
Cluster EST : UnigeneHs.55024 [ NCBI ]
CGAP (NCI)Hs.55024
Alternative Splicing GalleryENSG00000158156
Gene ExpressionXKR8 [ NCBI-GEO ]   XKR8 [ EBI - ARRAY_EXPRESS ]   XKR8 [ SEEK ]   XKR8 [ MEM ]
Gene Expression Viewer (FireBrowse)XKR8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55113
GTEX Portal (Tissue expression)XKR8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6D3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6D3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6D3
Splice isoforms : SwissVarQ9H6D3
PhosPhoSitePlusQ9H6D3
Domains : Interpro (EBI)XK-rel   
Domain families : Pfam (Sanger)XK-related (PF09815)   
Domain families : Pfam (NCBI)pfam09815   
Conserved Domain (NCBI)XKR8
DMDM Disease mutations55113
Blocks (Seattle)XKR8
SuperfamilyQ9H6D3
Human Protein AtlasENSG00000158156
Peptide AtlasQ9H6D3
HPRD07661
IPIIPI00008935   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6D3
IntAct (EBI)Q9H6D3
FunCoupENSG00000158156
BioGRIDXKR8
STRING (EMBL)XKR8
ZODIACXKR8
Ontologies - Pathways
QuickGOQ9H6D3
Ontology : AmiGOplasma membrane  integral component of membrane  engulfment of apoptotic cell  phosphatidylserine exposure on apoptotic cell surface  
Ontology : EGO-EBIplasma membrane  integral component of membrane  engulfment of apoptotic cell  phosphatidylserine exposure on apoptotic cell surface  
NDEx NetworkXKR8
Atlas of Cancer Signalling NetworkXKR8
Wikipedia pathwaysXKR8
Orthology - Evolution
OrthoDB55113
GeneTree (enSembl)ENSG00000158156
Phylogenetic Trees/Animal Genes : TreeFamXKR8
HOVERGENQ9H6D3
HOGENOMQ9H6D3
Homologs : HomoloGeneXKR8
Homology/Alignments : Family Browser (UCSC)XKR8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXKR8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XKR8
dbVarXKR8
ClinVarXKR8
1000_GenomesXKR8 
Exome Variant ServerXKR8
ExAC (Exome Aggregation Consortium)XKR8 (select the gene name)
Genetic variants : HAPMAP55113
Genomic Variants (DGV)XKR8 [DGVbeta]
DECIPHERXKR8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisXKR8 
Mutations
ICGC Data PortalXKR8 
TCGA Data PortalXKR8 
Broad Tumor PortalXKR8
OASIS PortalXKR8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICXKR8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDXKR8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch XKR8
DgiDB (Drug Gene Interaction Database)XKR8
DoCM (Curated mutations)XKR8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XKR8 (select a term)
intoGenXKR8
Cancer3DXKR8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenXKR8
Genetic Testing Registry XKR8
NextProtQ9H6D3 [Medical]
TSGene55113
GENETestsXKR8
Target ValidationXKR8
Huge Navigator XKR8 [HugePedia]
snp3D : Map Gene to Disease55113
BioCentury BCIQXKR8
ClinGenXKR8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55113
Chemical/Pharm GKB GenePA142670566
Clinical trialXKR8
Miscellaneous
canSAR (ICR)XKR8 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXKR8
EVEXXKR8
GoPubMedXKR8
iHOPXKR8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:49:12 CEST 2017

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