Atlas of Genetics and Cytogenetics in Oncology and Haematology


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XKR9 (XK related 9)

Identity

Alias_namesX Kell blood group precursor-related family, member 9
XK, Kell blood group complex subunit-related family, member 9
Other aliasXRG9
HGNC (Hugo) XKR9
LocusID (NCBI) 389668
Atlas_Id 54787
Location 8q13.3  [Link to chromosome band 8q13]
Location_base_pair Starts at 70669365 and ends at 70735942 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LACTB2 (8q13.3) / XKR9 (8q13.3)NCOA2 (8q13.3) / XKR9 (8q13.3)NCOA2 8q13.3 / XKR9 8q13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XKR9   20937
Cards
Entrez_Gene (NCBI)XKR9  389668  XK related 9
AliasesXRG9
GeneCards (Weizmann)XKR9
Ensembl hg19 (Hinxton)ENSG00000221947 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221947 [Gene_View]  chr8:70669365-70735942 [Contig_View]  XKR9 [Vega]
ICGC DataPortalENSG00000221947
TCGA cBioPortalXKR9
AceView (NCBI)XKR9
Genatlas (Paris)XKR9
WikiGenes389668
SOURCE (Princeton)XKR9
Genetics Home Reference (NIH)XKR9
Genomic and cartography
GoldenPath hg38 (UCSC)XKR9  -     chr8:70669365-70735942 +  8q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XKR9  -     8q13.3   [Description]    (hg19-Feb_2009)
EnsemblXKR9 - 8q13.3 [CytoView hg19]  XKR9 - 8q13.3 [CytoView hg38]
Mapping of homologs : NCBIXKR9 [Mapview hg19]  XKR9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY534247 BC111381 BC137104 BC137105 BC151845
RefSeq transcript (Entrez)NM_001011720 NM_001287258 NM_001287259 NM_001287260
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XKR9
Cluster EST : UnigeneHs.458938 [ NCBI ]
CGAP (NCI)Hs.458938
Alternative Splicing GalleryENSG00000221947
Gene ExpressionXKR9 [ NCBI-GEO ]   XKR9 [ EBI - ARRAY_EXPRESS ]   XKR9 [ SEEK ]   XKR9 [ MEM ]
Gene Expression Viewer (FireBrowse)XKR9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389668
GTEX Portal (Tissue expression)XKR9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5GH70   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5GH70  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5GH70
Splice isoforms : SwissVarQ5GH70
PhosPhoSitePlusQ5GH70
Domains : Interpro (EBI)XK-rel   
Domain families : Pfam (Sanger)XK-related (PF09815)   
Domain families : Pfam (NCBI)pfam09815   
Conserved Domain (NCBI)XKR9
DMDM Disease mutations389668
Blocks (Seattle)XKR9
SuperfamilyQ5GH70
Human Protein AtlasENSG00000221947
Peptide AtlasQ5GH70
HPRD18309
IPIIPI00399035   IPI00984846   IPI00985497   
Protein Interaction databases
DIP (DOE-UCLA)Q5GH70
IntAct (EBI)Q5GH70
FunCoupENSG00000221947
BioGRIDXKR9
STRING (EMBL)XKR9
ZODIACXKR9
Ontologies - Pathways
QuickGOQ5GH70
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkXKR9
Atlas of Cancer Signalling NetworkXKR9
Wikipedia pathwaysXKR9
Orthology - Evolution
OrthoDB389668
GeneTree (enSembl)ENSG00000221947
Phylogenetic Trees/Animal Genes : TreeFamXKR9
HOVERGENQ5GH70
HOGENOMQ5GH70
Homologs : HomoloGeneXKR9
Homology/Alignments : Family Browser (UCSC)XKR9
Gene fusions - Rearrangements
Fusion : MitelmanLACTB2/XKR9 [8q13.3/8q13.3]  [t(8;8)(q13;q13)]  
Fusion : MitelmanNCOA2/XKR9 [8q13.3/8q13.3]  [t(8;8)(q13;q13)]  
Fusion: TCGANCOA2 8q13.3 XKR9 8q13.3 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXKR9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XKR9
dbVarXKR9
ClinVarXKR9
1000_GenomesXKR9 
Exome Variant ServerXKR9
ExAC (Exome Aggregation Consortium)XKR9 (select the gene name)
Genetic variants : HAPMAP389668
Genomic Variants (DGV)XKR9 [DGVbeta]
DECIPHERXKR9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisXKR9 
Mutations
ICGC Data PortalXKR9 
TCGA Data PortalXKR9 
Broad Tumor PortalXKR9
OASIS PortalXKR9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICXKR9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDXKR9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch XKR9
DgiDB (Drug Gene Interaction Database)XKR9
DoCM (Curated mutations)XKR9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XKR9 (select a term)
intoGenXKR9
Cancer3DXKR9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenXKR9
Genetic Testing Registry XKR9
NextProtQ5GH70 [Medical]
TSGene389668
GENETestsXKR9
Target ValidationXKR9
Huge Navigator XKR9 [HugePedia]
snp3D : Map Gene to Disease389668
BioCentury BCIQXKR9
ClinGenXKR9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389668
Chemical/Pharm GKB GenePA142670567
Clinical trialXKR9
Miscellaneous
canSAR (ICR)XKR9 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXKR9
EVEXXKR9
GoPubMedXKR9
iHOPXKR9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed Jun 7 13:03:03 CEST 2017

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