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XKRX (XK, Kell blood group complex subunit-related, X-linked)

Identity

Alias_namesX Kell blood group precursor-related, X-linked
XK, Kell blood group complex subunit-related, X-linked
Alias_symbol (synonym)XPLAC
XKR2
Other aliasXRG2
HGNC (Hugo) XKRX
LocusID (NCBI) 402415
Atlas_Id 75787
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 100168431 and ends at 100183898 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XKRX   29845
Cards
Entrez_Gene (NCBI)XKRX  402415  XK, Kell blood group complex subunit-related, X-linked
AliasesXKR2; XPLAC; XRG2
GeneCards (Weizmann)XKRX
Ensembl hg19 (Hinxton)ENSG00000182489 [Gene_View]  chrX:100168431-100183898 [Contig_View]  XKRX [Vega]
Ensembl hg38 (Hinxton)ENSG00000182489 [Gene_View]  chrX:100168431-100183898 [Contig_View]  XKRX [Vega]
ICGC DataPortalENSG00000182489
TCGA cBioPortalXKRX
AceView (NCBI)XKRX
Genatlas (Paris)XKRX
WikiGenes402415
SOURCE (Princeton)XKRX
Genetics Home Reference (NIH)XKRX
Genomic and cartography
GoldenPath hg19 (UCSC)XKRX  -     chrX:100168431-100183898 -  Xq22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)XKRX  -     Xq22.1   [Description]    (hg38-Dec_2013)
EnsemblXKRX - Xq22.1 [CytoView hg19]  XKRX - Xq22.1 [CytoView hg38]
Mapping of homologs : NCBIXKRX [Mapview hg19]  XKRX [Mapview hg38]
OMIM300684   
Gene and transcription
Genbank (Entrez)AI087330 AK296711 AY534239 AY589511 BC137010
RefSeq transcript (Entrez)NM_212559
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_021224 NT_011651 NW_004929444
Consensus coding sequences : CCDS (NCBI)XKRX
Cluster EST : UnigeneHs.745071 [ NCBI ]
CGAP (NCI)Hs.745071
Alternative Splicing GalleryENSG00000182489
Gene ExpressionXKRX [ NCBI-GEO ]   XKRX [ EBI - ARRAY_EXPRESS ]   XKRX [ SEEK ]   XKRX [ MEM ]
Gene Expression Viewer (FireBrowse)XKRX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)402415
GTEX Portal (Tissue expression)XKRX
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PP77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PP77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PP77
Splice isoforms : SwissVarQ6PP77
PhosPhoSitePlusQ6PP77
Domains : Interpro (EBI)Transport_prot_XK   
Domain families : Pfam (Sanger)XK-related (PF09815)   
Domain families : Pfam (NCBI)pfam09815   
Conserved Domain (NCBI)XKRX
DMDM Disease mutations402415
Blocks (Seattle)XKRX
SuperfamilyQ6PP77
Human Protein AtlasENSG00000182489
Peptide AtlasQ6PP77
HPRD11687
IPIIPI00930497   IPI00401270   IPI00945215   
Protein Interaction databases
DIP (DOE-UCLA)Q6PP77
IntAct (EBI)Q6PP77
FunCoupENSG00000182489
BioGRIDXKRX
STRING (EMBL)XKRX
ZODIACXKRX
Ontologies - Pathways
QuickGOQ6PP77
Ontology : AmiGOplasma membrane  integral component of membrane  
Ontology : EGO-EBIplasma membrane  integral component of membrane  
NDEx NetworkXKRX
Atlas of Cancer Signalling NetworkXKRX
Wikipedia pathwaysXKRX
Orthology - Evolution
OrthoDB402415
GeneTree (enSembl)ENSG00000182489
Phylogenetic Trees/Animal Genes : TreeFamXKRX
HOVERGENQ6PP77
HOGENOMQ6PP77
Homologs : HomoloGeneXKRX
Homology/Alignments : Family Browser (UCSC)XKRX
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXKRX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XKRX
dbVarXKRX
ClinVarXKRX
1000_GenomesXKRX 
Exome Variant ServerXKRX
ExAC (Exome Aggregation Consortium)XKRX (select the gene name)
Genetic variants : HAPMAP402415
Genomic Variants (DGV)XKRX [DGVbeta]
DECIPHER (Syndromes)X:100168431-100183898  ENSG00000182489
CONAN: Copy Number AnalysisXKRX 
Mutations
ICGC Data PortalXKRX 
TCGA Data PortalXKRX 
Broad Tumor PortalXKRX
OASIS PortalXKRX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICXKRX  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDXKRX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch XKRX
DgiDB (Drug Gene Interaction Database)XKRX
DoCM (Curated mutations)XKRX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XKRX (select a term)
intoGenXKRX
Cancer3DXKRX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300684   
Orphanet
MedgenXKRX
Genetic Testing Registry XKRX
NextProtQ6PP77 [Medical]
TSGene402415
GENETestsXKRX
Huge Navigator XKRX [HugePedia]
snp3D : Map Gene to Disease402415
BioCentury BCIQXKRX
ClinGenXKRX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD402415
Chemical/Pharm GKB GenePA134962569
Clinical trialXKRX
Miscellaneous
canSAR (ICR)XKRX (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXKRX
EVEXXKRX
GoPubMedXKRX
iHOPXKRX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:51:51 CET 2017

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