Atlas of Genetics and Cytogenetics in Oncology and Haematology


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XKRY (XK related, Y-linked)

Identity

Alias_namesX Kell blood group precursor-related, Y-linked
XK, Kell blood group complex subunit-related, Y-linked
Alias_symbol (synonym)XKRY1
Other alias
HGNC (Hugo) XKRY
LocusID (NCBI) 9082
Atlas_Id 75788
Location Yq11.222  [Link to chromosome band Yq11]
Location_base_pair Starts at 17768980 and ends at 17770560 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XKRY   18571
Cards
Entrez_Gene (NCBI)XKRY  9082  XK related, Y-linked
AliasesXKRY1
GeneCards (Weizmann)XKRY
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrY:17768980-17770560 [Contig_View]  XKRY [Vega]
TCGA cBioPortalXKRY
AceView (NCBI)XKRY
Genatlas (Paris)XKRY
WikiGenes9082
SOURCE (Princeton)XKRY
Genetics Home Reference (NIH)XKRY
Genomic and cartography
GoldenPath hg38 (UCSC)XKRY  -     chrY:17768980-17770560 -  Yq11.222   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XKRY  -     Yq11.222   [Description]    (hg19-Feb_2009)
EnsemblXKRY - Yq11.222 [CytoView hg19]  XKRY - Yq11.222 [CytoView hg38]
Mapping of homologs : NCBIXKRY [Mapview hg19]  XKRY [Mapview hg38]
OMIM400015   415000   
Gene and transcription
Genbank (Entrez)AF000997 BC132883 BC132885 BC148607 BC153173
RefSeq transcript (Entrez)NM_004677
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XKRY
Cluster EST : UnigeneHs.158346 [ NCBI ]
CGAP (NCI)Hs.158346
Gene ExpressionXKRY [ NCBI-GEO ]   XKRY [ EBI - ARRAY_EXPRESS ]   XKRY [ SEEK ]   XKRY [ MEM ]
Gene Expression Viewer (FireBrowse)XKRY [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9082
GTEX Portal (Tissue expression)XKRY
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14609   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14609  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14609
Splice isoforms : SwissVarO14609
PhosPhoSitePlusO14609
Domains : Interpro (EBI)XK-rel   
Domain families : Pfam (Sanger)XK-related (PF09815)   
Domain families : Pfam (NCBI)pfam09815   
Conserved Domain (NCBI)XKRY
DMDM Disease mutations9082
Blocks (Seattle)XKRY
SuperfamilyO14609
Peptide AtlasO14609
HPRD02456
Protein Interaction databases
DIP (DOE-UCLA)O14609
IntAct (EBI)O14609
BioGRIDXKRY
STRING (EMBL)XKRY
ZODIACXKRY
Ontologies - Pathways
QuickGOO14609
Ontology : AmiGOsingle fertilization  integral component of membrane  
Ontology : EGO-EBIsingle fertilization  integral component of membrane  
NDEx NetworkXKRY
Atlas of Cancer Signalling NetworkXKRY
Wikipedia pathwaysXKRY
Orthology - Evolution
OrthoDB9082
Phylogenetic Trees/Animal Genes : TreeFamXKRY
HOVERGENO14609
HOGENOMO14609
Homologs : HomoloGeneXKRY
Homology/Alignments : Family Browser (UCSC)XKRY
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXKRY [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XKRY
dbVarXKRY
ClinVarXKRY
1000_GenomesXKRY 
Exome Variant ServerXKRY
ExAC (Exome Aggregation Consortium)XKRY (select the gene name)
Genetic variants : HAPMAP9082
Genomic Variants (DGV)XKRY [DGVbeta]
DECIPHERXKRY [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisXKRY 
Mutations
ICGC Data PortalXKRY 
TCGA Data PortalXKRY 
Broad Tumor PortalXKRY
OASIS PortalXKRY [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDXKRY
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch XKRY
DgiDB (Drug Gene Interaction Database)XKRY
DoCM (Curated mutations)XKRY (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XKRY (select a term)
intoGenXKRY
Cancer3DXKRY(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM400015    415000   
Orphanet
MedgenXKRY
Genetic Testing Registry XKRY
NextProtO14609 [Medical]
TSGene9082
GENETestsXKRY
Target ValidationXKRY
Huge Navigator XKRY [HugePedia]
snp3D : Map Gene to Disease9082
BioCentury BCIQXKRY
ClinGenXKRY
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9082
Chemical/Pharm GKB GenePA38583
Clinical trialXKRY
Miscellaneous
canSAR (ICR)XKRY (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXKRY
EVEXXKRY
GoPubMedXKRY
iHOPXKRY
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:49:12 CEST 2017

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