Atlas of Genetics and Cytogenetics in Oncology and Haematology


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XKRY2 (XK related, Y-linked 2)

Identity

Alias_namesXKRYP7
X Kell blood group precursor-related, Y-linked pseudogene 7
X Kell blood group precursor-related, Y-linked 2
XK, Kell blood group complex subunit-related, Y-linked 2
Other alias
HGNC (Hugo) XKRY2
LocusID (NCBI) 353515
Atlas_Id 75789
Location Yq11.222  [Link to chromosome band Yq11]
Location_base_pair Starts at 17768980 and ends at 17770560 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XKRY2   23922
Cards
Entrez_Gene (NCBI)XKRY2  353515  XK related, Y-linked 2
AliasesXKRYP7
GeneCards (Weizmann)XKRY2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrY:17768980-17770560 [Contig_View]  XKRY2 [Vega]
TCGA cBioPortalXKRY2
AceView (NCBI)XKRY2
Genatlas (Paris)XKRY2
WikiGenes353515
SOURCE (Princeton)XKRY2
Genetics Home Reference (NIH)XKRY2
Genomic and cartography
GoldenPath hg38 (UCSC)XKRY2  -     chrY:17768980-17770560 -  Yq11.222   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XKRY2  -     Yq11.222   [Description]    (hg19-Feb_2009)
EnsemblXKRY2 - Yq11.222 [CytoView hg19]  XKRY2 - Yq11.222 [CytoView hg38]
Mapping of homologs : NCBIXKRY2 [Mapview hg19]  XKRY2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC132901 BC132903 BC141489 BC148772
RefSeq transcript (Entrez)NM_001002906
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XKRY2
Cluster EST : UnigeneHs.632286 [ NCBI ]
CGAP (NCI)Hs.632286
Gene ExpressionXKRY2 [ NCBI-GEO ]   XKRY2 [ EBI - ARRAY_EXPRESS ]   XKRY2 [ SEEK ]   XKRY2 [ MEM ]
Gene Expression Viewer (FireBrowse)XKRY2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353515
GTEX Portal (Tissue expression)XKRY2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2RUG3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA2RUG3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA2RUG3
Splice isoforms : SwissVarA2RUG3
PhosPhoSitePlusA2RUG3
Domains : Interpro (EBI)XK-rel   
Domain families : Pfam (Sanger)XK-related (PF09815)   
Domain families : Pfam (NCBI)pfam09815   
Conserved Domain (NCBI)XKRY2
DMDM Disease mutations353515
Blocks (Seattle)XKRY2
SuperfamilyA2RUG3
Peptide AtlasA2RUG3
HPRD18603
IPIIPI00848083   IPI00023016   
Protein Interaction databases
DIP (DOE-UCLA)A2RUG3
IntAct (EBI)A2RUG3
BioGRIDXKRY2
STRING (EMBL)XKRY2
ZODIACXKRY2
Ontologies - Pathways
QuickGOA2RUG3
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkXKRY2
Atlas of Cancer Signalling NetworkXKRY2
Wikipedia pathwaysXKRY2
Orthology - Evolution
OrthoDB353515
Phylogenetic Trees/Animal Genes : TreeFamXKRY2
HOVERGENA2RUG3
HOGENOMA2RUG3
Homologs : HomoloGeneXKRY2
Homology/Alignments : Family Browser (UCSC)XKRY2
Gene fusions - Rearrangements
Tumor Fusion PortalXKRY2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXKRY2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XKRY2
dbVarXKRY2
ClinVarXKRY2
1000_GenomesXKRY2 
Exome Variant ServerXKRY2
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP353515
Genomic Variants (DGV)XKRY2 [DGVbeta]
DECIPHERXKRY2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisXKRY2 
Mutations
ICGC Data PortalXKRY2 
TCGA Data PortalXKRY2 
Broad Tumor PortalXKRY2
OASIS PortalXKRY2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDXKRY2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch XKRY2
DgiDB (Drug Gene Interaction Database)XKRY2
DoCM (Curated mutations)XKRY2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XKRY2 (select a term)
intoGenXKRY2
Cancer3DXKRY2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETXKRY2
MedgenXKRY2
Genetic Testing Registry XKRY2
NextProtA2RUG3 [Medical]
TSGene353515
GENETestsXKRY2
Target ValidationXKRY2
Huge Navigator XKRY2 [HugePedia]
snp3D : Map Gene to Disease353515
BioCentury BCIQXKRY2
ClinGenXKRY2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353515
Chemical/Pharm GKB GenePA134879643
Clinical trialXKRY2
Miscellaneous
canSAR (ICR)XKRY2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXKRY2
EVEXXKRY2
GoPubMedXKRY2
iHOPXKRY2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:01:21 CET 2017

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