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XPOT (exportin, tRNA)

Identity

Other namesXPO3
HGNC (Hugo) XPOT
LocusID (NCBI) 11260
Atlas_Id 42845
Location 12q14.2
Location_base_pair Starts at 64798153 and ends at 64842463 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2015)
LEMD3 12q14.3 / XPOT 12q14.2XPOT 12q14.2 / C12orf56 12q14.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XPOT   12826
Cards
Entrez_Gene (NCBI)XPOT  11260  exportin, tRNA
GeneCards (Weizmann)XPOT
Ensembl hg19 (Hinxton) [Gene_View]  chr12:64798153-64842463 [Contig_View]  XPOT [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:64798153-64842463 [Contig_View]  XPOT [Vega]
TCGA cBioPortalXPOT
AceView (NCBI)XPOT
Genatlas (Paris)XPOT
WikiGenes11260
SOURCE (Princeton)XPOT
Genomic and cartography
GoldenPath hg19 (UCSC)XPOT  -     chr12:64798153-64842463 +  12q14.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)XPOT  -     12q14.2   [Description]    (hg38-Dec_2013)
EnsemblXPOT - 12q14.2 [CytoView hg19]  XPOT - 12q14.2 [CytoView hg38]
Mapping of homologs : NCBIXPOT [Mapview hg19]  XPOT [Mapview hg38]
OMIM603180   
Gene and transcription
Genbank (Entrez)AF039022 AK098081 AK292884 AK308108 BC000950
RefSeq transcript (Entrez)NM_007235
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)XPOT
Cluster EST : UnigeneHs.592579 [ NCBI ]
CGAP (NCI)Hs.592579
Alternative Splicing : Fast-db (Paris)GSHG0006796
Gene ExpressionXPOT [ NCBI-GEO ]     XPOT [ SEEK ]   XPOT [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)11260
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43592 (Uniprot)
NextProtO43592  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43592
Splice isoforms : SwissVarO43592 (Swissvar)
PhosPhoSitePlusO43592
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Exportin-1/Importin-b-like    Importin-beta_N   
Domain families : Pfam (Sanger)Xpo1 (PF08389)   
Domain families : Pfam (NCBI)pfam08389   
Domain families : Smart (EMBL)IBN_N (SM00913)  
DMDM Disease mutations11260
Blocks (Seattle)XPOT
Peptide AtlasO43592
HPRD04418
IPIIPI00306290   IPI01009350   IPI00873692   IPI01015277   
Protein Interaction databases
DIP (DOE-UCLA)O43592
IntAct (EBI)O43592
BioGRIDXPOT
IntegromeDBXPOT
STRING (EMBL)XPOT
ZODIACXPOT
Ontologies - Pathways
QuickGOO43592
Ontology : AmiGOtRNA binding  nuclear pore  nucleoplasm  nucleoplasm  cytoplasm  cytosol  tRNA export from nucleus  intracellular protein transport  tRNA processing  Ran GTPase binding  gene expression  nucleobase-containing compound transmembrane transporter activity  nuclear matrix  tRNA re-export from nucleus  
Ontology : EGO-EBItRNA binding  nuclear pore  nucleoplasm  nucleoplasm  cytoplasm  cytosol  tRNA export from nucleus  intracellular protein transport  tRNA processing  Ran GTPase binding  gene expression  nucleobase-containing compound transmembrane transporter activity  nuclear matrix  tRNA re-export from nucleus  
Pathways : KEGGRNA transport   
Protein Interaction DatabaseXPOT
Atlas of Cancer Signalling NetworkXPOT
Wikipedia pathwaysXPOT
Orthology - Evolution
OrthoDB11260
Phylogenetic Trees/Animal Genes : TreeFamXPOT
Homologs : HomoloGeneXPOT
Homology/Alignments : Family Browser (UCSC)XPOT
Gene fusions - Rearrangements
Fusion: TCGALEMD3 12q14.3 XPOT 12q14.2 BRCA
Fusion: TCGAXPOT 12q14.2 C12orf56 12q14.2 OV
Polymorphisms : SNP, variants
NCBI Variation ViewerXPOT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XPOT
dbVarXPOT
ClinVarXPOT
1000_GenomesXPOT 
Exome Variant ServerXPOT
SNP (GeneSNP Utah)XPOT
SNP : HGBaseXPOT
Genetic variants : HAPMAPXPOT
Genomic Variants (DGV)XPOT [DGVbeta]
Mutations
ICGC Data PortalXPOT 
TCGA Data PortalXPOT 
Tumor PortalXPOT
TCGA Copy Number PortalXPOT
Somatic Mutations in Cancer : COSMICXPOT 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch XPOT
DgiDB (Drug Gene Interaction Database)XPOT
DoCM (Curated mutations)XPOT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XPOT (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)12:64798153-64842463
CONAN: Copy Number AnalysisXPOT 
Mutations and Diseases : HGMDXPOT
OMIM603180   
MedgenXPOT
NextProtO43592 [Medical]
TSGene11260
GENETestsXPOT
Huge Navigator XPOT [HugePedia]  XPOT [HugeCancerGEM]
snp3D : Map Gene to Disease11260
BioCentury BCIQXPOT
General knowledge
Chemical/Protein Interactions : CTD11260
Chemical/Pharm GKB GenePA37419
Clinical trialXPOT
Other databases
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXPOT
GoPubMedXPOT
iHOPXPOT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 19:45:31 CET 2016

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