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XPOT (exportin, tRNA)

Identity

Other namesXPO3
HGNC (Hugo) XPOT
LocusID (NCBI) 11260
Location 12q14.2
Location_base_pair Starts at 64798153 and ends at 64842463 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)XPOT   12826
Cards
Entrez_Gene (NCBI)XPOT  11260  exportin, tRNA
GeneCards (Weizmann)XPOT
Ensembl (Hinxton) [Gene_View]  chr12:64798153-64842463 [Contig_View]  XPOT [Vega]
AceView (NCBI)XPOT
Genatlas (Paris)XPOT
WikiGenes11260
SOURCE (Princeton)NM_007235
Genomic and cartography
GoldenPath (UCSC)XPOT  -  12q14.2   chr12:64798153-64842463 +  12q14.2   [Description]    (hg19-Feb_2009)
EnsemblXPOT - 12q14.2 [CytoView]
Mapping of homologs : NCBIXPOT [Mapview]
OMIM603180   
Gene and transcription
Genbank (Entrez)AF039022 AK292884 AK308108 BC000950 BC020569
RefSeq transcript (Entrez)NM_007235
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838060 NW_004929384
Consensus coding sequences : CCDS (NCBI)XPOT
Cluster EST : UnigeneHs.85951 [ NCBI ]
CGAP (NCI)Hs.85951
Alternative Splicing : Fast-db (Paris)GSHG0006796
Gene ExpressionXPOT [ NCBI-GEO ]     XPOT [ SEEK ]   XPOT [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43592 (Uniprot)
NextProtO43592  [Medical]
With graphics : InterProO43592
Splice isoforms : SwissVarO43592 (Swissvar)
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Exportin-1/Importin-b-like    Importin-beta_N   
Related proteins : CluSTrO43592
Domain families : Pfam (Sanger)Xpo1 (PF08389)   
Domain families : Pfam (NCBI)pfam08389   
Domain families : Smart (EMBL)IBN_N (SM00913)  
DMDM Disease mutations11260
Blocks (Seattle)O43592
Peptide AtlasO43592
HPRD04418
IPIIPI00306290   IPI01009350   IPI00873692   IPI01015277   
Protein Interaction databases
DIP (DOE-UCLA)O43592
IntAct (EBI)O43592
BioGRIDXPOT
IntegromeDBXPOT
STRING (EMBL)XPOT
Ontologies - Pathways
QuickGOO43592
Ontology : AmiGOtRNA binding  nucleus  nuclear pore  nucleoplasm  nucleolus  cytoplasm  tRNA export from nucleus  intracellular protein transport  Ran GTPase binding  
Ontology : EGO-EBItRNA binding  nucleus  nuclear pore  nucleoplasm  nucleolus  cytoplasm  tRNA export from nucleus  intracellular protein transport  Ran GTPase binding  
Pathways : KEGGRNA transport   
Protein Interaction DatabaseXPOT
Wikipedia pathwaysXPOT
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)XPOT
SNP (GeneSNP Utah)XPOT
SNP : HGBaseXPOT
Genetic variants : HAPMAPXPOT
1000_GenomesXPOT 
CONAN: Copy Number AnalysisXPOT 
Somatic Mutations in Cancer : COSMICXPOT 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
DECIPHER (Syndromes)12:64798153-64842463
Mutations and Diseases : HGMDXPOT
OMIM603180   
MedgenXPOT
GENETestsXPOT
Disease Genetic AssociationXPOT
Huge Navigator XPOT [HugePedia]  XPOT [HugeCancerGEM]
Genomic VariantsXPOT  XPOT [DGVbeta]
Exome VariantXPOT
dbVarXPOT
ClinVarXPOT
snp3D : Map Gene to Disease11260
General knowledge
Homologs : HomoloGeneXPOT
Homology/Alignments : Family Browser (UCSC)XPOT
Phylogenetic Trees/Animal Genes : TreeFamXPOT
Chemical/Protein Interactions : CTD11260
Chemical/Pharm GKB GenePA37419
Clinical trialXPOT
Other databases
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
CoreMineXPOT
GoPubMedXPOT
iHOPXPOT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 18:06:02 CET 2014

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