Atlas of Genetics and Cytogenetics in Oncology and Haematology

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XPOT (exportin, tRNA)

Identity

Other namesXPO3
HGNC (Hugo) XPOT
LocusID (NCBI) 11260
Location 12q14.2
Location_base_pair Starts at 64798153 and ends at 64842463 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)XPOT   12826
Entrez_Gene (NCBI)XPOT  11260  exportin, tRNA
Cards
GeneCards (Weizmann)XPOT
Ensembl (Hinxton)ENSG00000184575 [Gene_View]  chr12:64798153-64842463 [Contig_View]  XPOT [Vega]
AceView (NCBI)XPOT
Genatlas (Paris)XPOT
SOURCE (Stanford)NM_007235
Genomic and cartography
GoldenPath (UCSC)XPOT  -  12q14.2   chr12:64798153-64842463 +  12q14.2   [Description]    (hg19-Feb_2009)
EnsemblXPOT - 12q14.2 [CytoView]
Mapping of homologs : NCBIXPOT [Mapview]
OMIM603180   
Gene and transcription
Genbank (Entrez)AF039022 AK292884 AK308108 BC000950 BC020569
RefSeq transcript (SRS)NM_007235
RefSeq transcript (Entrez)NM_007235
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838060 NW_004078075
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838060 NW_004078075
Consensus coding sequences : CCDS (NCBI)XPOT
Cluster EST : UnigeneHs.85951 [ SRS ] Hs.85951 [ NCBI ]
CGAP (NCI)Hs.85951
Alternative Splicing : Fast-db (Paris)GSHG0006796
Alternative Splicing GalleryENSG00000184575
Gene ExpressionXPOT [ NCBI-GEO ]   XPOT [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43592 (SRS) O43592 (Uniprot)
NextProtO43592
With graphics : InterProO43592
Splice isoforms : SwissVarO43592(Swissvar)
Domains : Interpro (SRS)ARM-like    ARM-type_fold    Exportin-1/Importin-b-like    Importin-beta_N   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Exportin-1/Importin-b-like    Importin-beta_N   
Related proteins : CluSTrO43592
Domain families : Pfam (SRS)IBN_N (PF03810)    Xpo1 (PF08389)   
Domain families : Pfam (Sanger)IBN_N (PF03810)    Xpo1 (PF08389)   
Domain families : Pfam (NCBI)pfam03810    pfam08389   
Domain families : Smart (EMBL)IBN_N (SM00913)  
DMDM11260
Blocks (Seattle)O43592
Human Protein AtlasENSG00000184575
HPRD04418
IPIIPI00306290   IPI01009350   IPI00873692   IPI01015277   
Protein Interaction databases
DIP (DOE-UCLA)O43592
IntAct (EBI)O43592
FunCoupENSG00000184575
REACTOMEXPOT
Protein Interaction Database11260
BioGRIDXPOT
InParanoidO43592
Interologous Interaction database O43592
IntegromeDBXPOT
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)XPOT
SNP (GeneSNP Utah)XPOT
SNP : HGBaseXPOT
Genetic variants : HAPMAPXPOT
Somatic Mutations in Cancer : COSMICXPOT 
CONAN: Copy Number AnalysisXPOT 
Mutations and Diseases : HGMDXPOT
OMIM603180   
GENETests603180   
Disease Genetic AssociationXPOT
Huge Navigator XPOT [HugePedia]  XPOT [HugeCancerGEM]
Genomic VariantsXPOT  XPOT [DGVbeta]
snp3D : Map Gene to Disease11260
General knowledge
Homologs : HomoloGeneXPOT
Homology/Alignments : Family Browser (UCSC)XPOT
Phylogenetic Trees/Animal Genes : TreeFamXPOT
Chemical/Protein Interactions : CTD11260
Chemical/Pharm GKB GenePA37419
Clinical trialXPOT
Cancer Resource (Charite)ENSG00000184575
Ontology : AmiGOtRNA binding  nuclear pore  nucleoplasm  cytoplasm  tRNA export from nucleus  intracellular protein transport  protein transporter activity  
Ontology : EGO-EBItRNA binding  nuclear pore  nucleoplasm  cytoplasm  tRNA export from nucleus  intracellular protein transport  protein transporter activity  
Other databases
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
PubGeneXPOT
iHOPXPOT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:22:01 CEST 2013
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