Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

XPOT (exportin for tRNA)

Identity

Alias_namesexportin, tRNA (nuclear export receptor for tRNAs)
exportin, tRNA
Alias_symbol (synonym)XPO3
Other alias
HGNC (Hugo) XPOT
LocusID (NCBI) 11260
Atlas_Id 42845
Location 12q14.2  [Link to chromosome band 12q14]
Location_base_pair Starts at 64404348 and ends at 64451128 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CHD1L (1q21.1) / XPOT (12q14.2)LEMD3 (12q14.3) / XPOT (12q14.2)XPOT (12q14.2) / C12orf56 (12q14.2)
XPOT (12q14.2) / XPOT (12q14.2)LEMD3 12q14.3 / XPOT 12q14.2XPOT 12q14.2 / C12orf56 12q14.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]

Solid Tumors TT_t1212q14q14ID101294 TT_t1212q14q14ID101304


External links

Nomenclature
HGNC (Hugo)XPOT   12826
Cards
Entrez_Gene (NCBI)XPOT  11260  exportin for tRNA
AliasesXPO3
GeneCards (Weizmann)XPOT
Ensembl hg19 (Hinxton)ENSG00000184575 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184575 [Gene_View]  ENSG00000184575 [Sequence]  chr12:64404348-64451128 [Contig_View]  XPOT [Vega]
ICGC DataPortalENSG00000184575
TCGA cBioPortalXPOT
AceView (NCBI)XPOT
Genatlas (Paris)XPOT
WikiGenes11260
SOURCE (Princeton)XPOT
Genetics Home Reference (NIH)XPOT
Genomic and cartography
GoldenPath hg38 (UCSC)XPOT  -     chr12:64404348-64451128 +  12q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XPOT  -     12q14.2   [Description]    (hg19-Feb_2009)
GoldenPathXPOT - 12q14.2 [CytoView hg19]  XPOT - 12q14.2 [CytoView hg38]
ImmunoBaseENSG00000184575
Mapping of homologs : NCBIXPOT [Mapview hg19]  XPOT [Mapview hg38]
OMIM603180   
Gene and transcription
Genbank (Entrez)AF039022 AK098081 AK292884 AK308108 BC000950
RefSeq transcript (Entrez)NM_007235
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XPOT
Alternative Splicing GalleryENSG00000184575
Gene ExpressionXPOT [ NCBI-GEO ]   XPOT [ EBI - ARRAY_EXPRESS ]   XPOT [ SEEK ]   XPOT [ MEM ]
Gene Expression Viewer (FireBrowse)XPOT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)11260
GTEX Portal (Tissue expression)XPOT
Human Protein AtlasENSG00000184575-XPOT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)XPOT
DMDM Disease mutations11260
Blocks (Seattle)XPOT
Human Protein Atlas [tissue]ENSG00000184575-XPOT [tissue]
HPRD04418
IPIIPI00306290   IPI01009350   IPI00873692   IPI01015277   
Protein Interaction databases
FunCoupENSG00000184575
BioGRIDXPOT
STRING (EMBL)XPOT
ZODIACXPOT
Ontologies - Pathways
Huge Navigator XPOT [HugePedia]
snp3D : Map Gene to Disease11260
BioCentury BCIQXPOT
ClinGenXPOT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11260
Chemical/Pharm GKB GenePA37419
Clinical trialXPOT
Miscellaneous
canSAR (ICR)XPOT (select the gene name)
DataMed IndexXPOT
Probes
Litterature
PubMed68 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXPOT
EVEXXPOT
GoPubMedXPOT
iHOPXPOT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 19 17:16:52 CET 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.