Atlas of Genetics and Cytogenetics in Oncology and Haematology

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XPR1 (xenotropic and polytropic retrovirus receptor 1)

Identity

Other namesSYG1
X3
HGNC (Hugo) XPR1
LocusID (NCBI) 9213
Location 1q25.3
Location_base_pair Starts at 180601146 and ends at 180859415 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)XPR1   12827
Cards
Entrez_Gene (NCBI)XPR1  9213  xenotropic and polytropic retrovirus receptor 1
GeneCards (Weizmann)XPR1
Ensembl hg19 (Hinxton)ENSG00000143324 [Gene_View]  chr1:180601146-180859415 [Contig_View]  XPR1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000143324 [Gene_View]  chr1:180601146-180859415 [Contig_View]  XPR1 [Vega]
ICGC DataPortalENSG00000143324
cBioPortalXPR1
AceView (NCBI)XPR1
Genatlas (Paris)XPR1
WikiGenes9213
SOURCE (Princeton)XPR1
Genomic and cartography
GoldenPath hg19 (UCSC)XPR1  -     chr1:180601146-180859415 +  1q25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)XPR1  -     1q25.3   [Description]    (hg38-Dec_2013)
EnsemblXPR1 - 1q25.3 [CytoView hg19]  XPR1 - 1q25.3 [CytoView hg38]
Mapping of homologs : NCBIXPR1 [Mapview hg19]  XPR1 [Mapview hg38]
OMIM605237   
Gene and transcription
Genbank (Entrez)AA425354 AB075495 AF089744 AF099082 AF115389
RefSeq transcript (Entrez)NM_001135669 NM_004736
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_004487 NW_001838533 NW_004929293
Consensus coding sequences : CCDS (NCBI)XPR1
Cluster EST : UnigeneHs.227656 [ NCBI ]
CGAP (NCI)Hs.227656
Alternative Splicing : Fast-db (Paris)GSHG0001239
Alternative Splicing GalleryENSG00000143324
Gene ExpressionXPR1 [ NCBI-GEO ]     XPR1 [ SEEK ]   XPR1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBH6 (Uniprot)
NextProtQ9UBH6  [Medical]
With graphics : InterProQ9UBH6
Splice isoforms : SwissVarQ9UBH6 (Swissvar)
Domaine pattern : Prosite (Expaxy)EXS (PS51380)    SPX (PS51382)   
Domains : Interpro (EBI)EXS_C    SPX_N   
Related proteins : CluSTrQ9UBH6
Domain families : Pfam (Sanger)EXS (PF03124)    SPX (PF03105)   
Domain families : Pfam (NCBI)pfam03124    pfam03105   
DMDM Disease mutations9213
Blocks (Seattle)Q9UBH6
Human Protein AtlasENSG00000143324
Peptide AtlasQ9UBH6
HPRD05574
IPIIPI00295447   IPI00217110   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBH6
IntAct (EBI)Q9UBH6
FunCoupENSG00000143324
BioGRIDXPR1
IntegromeDBXPR1
STRING (EMBL)XPR1
Ontologies - Pathways
QuickGOQ9UBH6
Ontology : AmiGOvirus receptor activity  receptor activity  transmembrane signaling receptor activity  G-protein coupled receptor activity  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  response to virus  
Ontology : EGO-EBIvirus receptor activity  receptor activity  transmembrane signaling receptor activity  G-protein coupled receptor activity  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  response to virus  
Protein Interaction DatabaseXPR1
DoCM (Curated mutations)XPR1
Wikipedia pathwaysXPR1
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerXPR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XPR1
dbVarXPR1
ClinVarXPR1
1000_GenomesXPR1 
Exome Variant ServerXPR1
SNP (GeneSNP Utah)XPR1
SNP : HGBaseXPR1
Genetic variants : HAPMAPXPR1
Genomic VariantsXPR1  XPR1 [DGVbeta]
Mutations
ICGC Data PortalENSG00000143324 
Somatic Mutations in Cancer : COSMICXPR1 
CONAN: Copy Number AnalysisXPR1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:180601146-180859415
Mutations and Diseases : HGMDXPR1
OMIM605237   
MedgenXPR1
NextProtQ9UBH6 [Medical]
GENETestsXPR1
Disease Genetic AssociationXPR1
Huge Navigator XPR1 [HugePedia]  XPR1 [HugeCancerGEM]
snp3D : Map Gene to Disease9213
DGIdb (Drug Gene Interaction db)XPR1
General knowledge
Homologs : HomoloGeneXPR1
Homology/Alignments : Family Browser (UCSC)XPR1
Phylogenetic Trees/Animal Genes : TreeFamXPR1
Chemical/Protein Interactions : CTD9213
Chemical/Pharm GKB GenePA37420
Clinical trialXPR1
Cancer Resource (Charite)ENSG00000143324
Other databases
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
CoreMineXPR1
GoPubMedXPR1
iHOPXPR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Dec 21 02:19:39 CET 2014
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