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XRRA1 (X-ray radiation resistance associated 1)

Identity

Alias (NCBI)-
HGNC (Hugo) XRRA1
HGNC Alias symbFLJ00225
LocusID (NCBI) 143570
Atlas_Id 75795
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 74840230 and ends at 74949091 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BCAS3 (17q23.2) / XRRA1 (11q13.4)CMSS1 (3q12.1) / XRRA1 (11q13.4)XRRA1 (11q13.4) / CCAR2 (8p21.3)
XRRA1 (11q13.4) / FAM168A (11q13.4)XRRA1 (11q13.4) / SPCS2 (11q13.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)XRRA1   18868
Cards
Entrez_Gene (NCBI)XRRA1    X-ray radiation resistance associated 1
Aliases
GeneCards (Weizmann)XRRA1
Ensembl hg19 (Hinxton)ENSG00000166435 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166435 [Gene_View]  ENSG00000166435 [Sequence]  chr11:74840230-74949091 [Contig_View]  XRRA1 [Vega]
ICGC DataPortalENSG00000166435
TCGA cBioPortalXRRA1
AceView (NCBI)XRRA1
Genatlas (Paris)XRRA1
SOURCE (Princeton)XRRA1
Genetics Home Reference (NIH)XRRA1
Genomic and cartography
GoldenPath hg38 (UCSC)XRRA1  -     chr11:74840230-74949091 -  11q13.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XRRA1  -     11q13.4   [Description]    (hg19-Feb_2009)
GoldenPathXRRA1 - 11q13.4 [CytoView hg19]  XRRA1 - 11q13.4 [CytoView hg38]
ImmunoBaseENSG00000166435
Genome Data Viewer NCBIXRRA1 [Mapview hg19]  
OMIM609788   
Gene and transcription
Genbank (Entrez)AF439934 AK056364 AK074152 AK091449 AY163836
RefSeq transcript (Entrez)NM_001270380 NM_001270381 NM_001378157 NM_001378158 NM_001378159 NM_001378160 NM_001378161 NM_001378162 NM_001378163 NM_001378164 NM_001378165 NM_001378166 NM_001378167 NM_001378168 NM_001378169 NM_001378170 NM_001378171 NM_001378172 NM_001378173 NM_001378174 NM_001378175 NM_001378176 NM_182969
Consensus coding sequences : CCDS (NCBI)XRRA1
Gene ExpressionXRRA1 [ NCBI-GEO ]   XRRA1 [ EBI - ARRAY_EXPRESS ]   XRRA1 [ SEEK ]   XRRA1 [ MEM ]
Gene Expression Viewer (FireBrowse)XRRA1 [ Firebrowse - Broad ]
GenevisibleExpression of XRRA1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)143570
GTEX Portal (Tissue expression)XRRA1
Human Protein AtlasENSG00000166435-XRRA1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P2D8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P2D8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P2D8
PhosPhoSitePlusQ6P2D8
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRR_dom_sf    XRRA1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)XRRA1
SuperfamilyQ6P2D8
AlphaFold pdb e-kbQ6P2D8   
Human Protein Atlas [tissue]ENSG00000166435-XRRA1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q6P2D8
IntAct (EBI)Q6P2D8
BioGRIDXRRA1
STRING (EMBL)XRRA1
ZODIACXRRA1
Ontologies - Pathways
QuickGOQ6P2D8
Ontology : AmiGOmolecular_function  nucleus  nucleoplasm  cytoplasm  response to X-ray  nuclear body  
Ontology : EGO-EBImolecular_function  nucleus  nucleoplasm  cytoplasm  response to X-ray  nuclear body  
NDEx NetworkXRRA1
Atlas of Cancer Signalling NetworkXRRA1
Wikipedia pathwaysXRRA1
Orthology - Evolution
OrthoDB143570
GeneTree (enSembl)ENSG00000166435
Phylogenetic Trees/Animal Genes : TreeFamXRRA1
Homologs : HomoloGeneXRRA1
Homology/Alignments : Family Browser (UCSC)XRRA1
Gene fusions - Rearrangements
Fusion : QuiverXRRA1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXRRA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XRRA1
dbVarXRRA1
ClinVarXRRA1
MonarchXRRA1
1000_GenomesXRRA1 
Exome Variant ServerXRRA1
GNOMAD BrowserENSG00000166435
Varsome BrowserXRRA1
ACMGXRRA1 variants
VarityQ6P2D8
Genomic Variants (DGV)XRRA1 [DGVbeta]
DECIPHERXRRA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisXRRA1 
Mutations
ICGC Data PortalXRRA1 
TCGA Data PortalXRRA1 
Broad Tumor PortalXRRA1
OASIS PortalXRRA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICXRRA1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DXRRA1
Mutations and Diseases : HGMDXRRA1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaXRRA1
DgiDB (Drug Gene Interaction Database)XRRA1
DoCM (Curated mutations)XRRA1
CIViC (Clinical Interpretations of Variants in Cancer)XRRA1
Cancer3DXRRA1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609788   
Orphanet
DisGeNETXRRA1
MedgenXRRA1
Genetic Testing Registry XRRA1
NextProtQ6P2D8 [Medical]
GENETestsXRRA1
Target ValidationXRRA1
Huge Navigator XRRA1 [HugePedia]
ClinGenXRRA1
Clinical trials, drugs, therapy
MyCancerGenomeXRRA1
Protein Interactions : CTDXRRA1
Pharm GKB GenePA134988069
PharosQ6P2D8
Clinical trialXRRA1
Miscellaneous
canSAR (ICR)XRRA1
HarmonizomeXRRA1
DataMed IndexXRRA1
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXXRRA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:28:40 CEST 2021

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