Atlas of Genetics and Cytogenetics in Oncology and Haematology


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XRRA1 (X-ray radiation resistance associated 1)

Identity

Alias_symbol (synonym)FLJ00225
Other alias-
HGNC (Hugo) XRRA1
LocusID (NCBI) 143570
Atlas_Id 75795
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 74840910 and ends at 74949187 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BCAS3 (17q23.2) / XRRA1 (11q13.4)CMSS1 (3q12.1) / XRRA1 (11q13.4)XRRA1 (11q13.4) / CCAR2 (8p21.3)
XRRA1 (11q13.4) / FAM168A (11q13.4)XRRA1 (11q13.4) / SPCS2 (11q13.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XRRA1   18868
Cards
Entrez_Gene (NCBI)XRRA1  143570  X-ray radiation resistance associated 1
Aliases
GeneCards (Weizmann)XRRA1
Ensembl hg19 (Hinxton)ENSG00000166435 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166435 [Gene_View]  chr11:74840910-74949187 [Contig_View]  XRRA1 [Vega]
ICGC DataPortalENSG00000166435
TCGA cBioPortalXRRA1
AceView (NCBI)XRRA1
Genatlas (Paris)XRRA1
WikiGenes143570
SOURCE (Princeton)XRRA1
Genetics Home Reference (NIH)XRRA1
Genomic and cartography
GoldenPath hg38 (UCSC)XRRA1  -     chr11:74840910-74949187 -  11q13.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XRRA1  -     11q13.4   [Description]    (hg19-Feb_2009)
EnsemblXRRA1 - 11q13.4 [CytoView hg19]  XRRA1 - 11q13.4 [CytoView hg38]
Mapping of homologs : NCBIXRRA1 [Mapview hg19]  XRRA1 [Mapview hg38]
OMIM609788   
Gene and transcription
Genbank (Entrez)AF439934 AK056364 AK074152 AK091449 AY163836
RefSeq transcript (Entrez)NM_001270380 NM_001270381 NM_182969
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XRRA1
Cluster EST : UnigeneHs.370145 [ NCBI ]
CGAP (NCI)Hs.370145
Alternative Splicing GalleryENSG00000166435
Gene ExpressionXRRA1 [ NCBI-GEO ]   XRRA1 [ EBI - ARRAY_EXPRESS ]   XRRA1 [ SEEK ]   XRRA1 [ MEM ]
Gene Expression Viewer (FireBrowse)XRRA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)143570
GTEX Portal (Tissue expression)XRRA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P2D8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P2D8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P2D8
Splice isoforms : SwissVarQ6P2D8
PhosPhoSitePlusQ6P2D8
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)XRRA1
DMDM Disease mutations143570
Blocks (Seattle)XRRA1
SuperfamilyQ6P2D8
Human Protein AtlasENSG00000166435
Peptide AtlasQ6P2D8
IPIIPI00853095   IPI00440153   IPI00884929   IPI00884978   IPI00902811   IPI00976217   IPI00470821   IPI00978475   IPI00984394   IPI00977350   IPI00977231   
Protein Interaction databases
DIP (DOE-UCLA)Q6P2D8
IntAct (EBI)Q6P2D8
FunCoupENSG00000166435
BioGRIDXRRA1
STRING (EMBL)XRRA1
ZODIACXRRA1
Ontologies - Pathways
QuickGOQ6P2D8
Ontology : AmiGOmolecular_function  nucleus  nucleoplasm  cytoplasm  response to X-ray  nuclear body  
Ontology : EGO-EBImolecular_function  nucleus  nucleoplasm  cytoplasm  response to X-ray  nuclear body  
NDEx NetworkXRRA1
Atlas of Cancer Signalling NetworkXRRA1
Wikipedia pathwaysXRRA1
Orthology - Evolution
OrthoDB143570
GeneTree (enSembl)ENSG00000166435
Phylogenetic Trees/Animal Genes : TreeFamXRRA1
HOVERGENQ6P2D8
HOGENOMQ6P2D8
Homologs : HomoloGeneXRRA1
Homology/Alignments : Family Browser (UCSC)XRRA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXRRA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XRRA1
dbVarXRRA1
ClinVarXRRA1
1000_GenomesXRRA1 
Exome Variant ServerXRRA1
ExAC (Exome Aggregation Consortium)XRRA1 (select the gene name)
Genetic variants : HAPMAP143570
Genomic Variants (DGV)XRRA1 [DGVbeta]
DECIPHERXRRA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisXRRA1 
Mutations
ICGC Data PortalXRRA1 
TCGA Data PortalXRRA1 
Broad Tumor PortalXRRA1
OASIS PortalXRRA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICXRRA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDXRRA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch XRRA1
DgiDB (Drug Gene Interaction Database)XRRA1
DoCM (Curated mutations)XRRA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XRRA1 (select a term)
intoGenXRRA1
Cancer3DXRRA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609788   
Orphanet
MedgenXRRA1
Genetic Testing Registry XRRA1
NextProtQ6P2D8 [Medical]
TSGene143570
GENETestsXRRA1
Target ValidationXRRA1
Huge Navigator XRRA1 [HugePedia]
snp3D : Map Gene to Disease143570
BioCentury BCIQXRRA1
ClinGenXRRA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD143570
Chemical/Pharm GKB GenePA134988069
Clinical trialXRRA1
Miscellaneous
canSAR (ICR)XRRA1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXRRA1
EVEXXRRA1
GoPubMedXRRA1
iHOPXRRA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:43:58 CEST 2017

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