Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

XXYLT1-AS2 (XXYLT1 antisense RNA 2)

Identity

Alias_namesXXYLT1 antisense RNA 2 (non-protein coding)
Other alias-
HGNC (Hugo) XXYLT1-AS2
LocusID (NCBI) 101410543
Atlas_Id 75798
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 195147871 and ends at 195152856 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XXYLT1-AS2   41154
Cards
Entrez_Gene (NCBI)XXYLT1-AS2  101410543  XXYLT1 antisense RNA 2
Aliases
GeneCards (Weizmann)XXYLT1-AS2
Ensembl hg19 (Hinxton)ENSG00000230266 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230266 [Gene_View]  chr3:195147871-195152856 [Contig_View]  XXYLT1-AS2 [Vega]
ICGC DataPortalENSG00000230266
TCGA cBioPortalXXYLT1-AS2
AceView (NCBI)XXYLT1-AS2
Genatlas (Paris)XXYLT1-AS2
WikiGenes101410543
SOURCE (Princeton)XXYLT1-AS2
Genetics Home Reference (NIH)XXYLT1-AS2
Genomic and cartography
GoldenPath hg38 (UCSC)XXYLT1-AS2  -     chr3:195147871-195152856 +  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XXYLT1-AS2  -     3q29   [Description]    (hg19-Feb_2009)
EnsemblXXYLT1-AS2 - 3q29 [CytoView hg19]  XXYLT1-AS2 - 3q29 [CytoView hg38]
Mapping of homologs : NCBIXXYLT1-AS2 [Mapview hg19]  XXYLT1-AS2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA344494 AA344559 AI307804 AW963078 R83154
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XXYLT1-AS2
Cluster EST : UnigeneHs.658170 [ NCBI ]
CGAP (NCI)Hs.658170
Alternative Splicing GalleryENSG00000230266
Gene ExpressionXXYLT1-AS2 [ NCBI-GEO ]   XXYLT1-AS2 [ EBI - ARRAY_EXPRESS ]   XXYLT1-AS2 [ SEEK ]   XXYLT1-AS2 [ MEM ]
Gene Expression Viewer (FireBrowse)XXYLT1-AS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101410543
GTEX Portal (Tissue expression)XXYLT1-AS2
Human Protein AtlasENSG00000230266-XXYLT1-AS2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)XXYLT1-AS2
DMDM Disease mutations101410543
Blocks (Seattle)XXYLT1-AS2
Human Protein Atlas [tissue]ENSG00000230266-XXYLT1-AS2 [tissue]
Protein Interaction databases
FunCoupENSG00000230266
BioGRIDXXYLT1-AS2
STRING (EMBL)XXYLT1-AS2
ZODIACXXYLT1-AS2
Ontologies - Pathways
Huge Navigator XXYLT1-AS2 [HugePedia]
snp3D : Map Gene to Disease101410543
BioCentury BCIQXXYLT1-AS2
ClinGenXXYLT1-AS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101410543
Clinical trialXXYLT1-AS2
Miscellaneous
canSAR (ICR)XXYLT1-AS2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXXYLT1-AS2
EVEXXXYLT1-AS2
GoPubMedXXYLT1-AS2
iHOPXXYLT1-AS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:09:24 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.