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XXYLT1 (xyloside xylosyltransferase 1)

Identity

Alias_namesC3orf21
chromosome 3 open reading frame 21
Alias_symbol (synonym)FLJ35155
Other alias
HGNC (Hugo) XXYLT1
LocusID (NCBI) 152002
Atlas_Id 75796
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 195068279 and ends at 195247920 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
XXYLT1 (3q29) / FARP1 (13q32.2)XXYLT1 (3q29) / PLCD4 (2q35)XXYLT1 (3q29) / TPRG1 (3q28)
XXYLT1 (3q29) / XXYLT1 (3q29)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XXYLT1   26639
Cards
Entrez_Gene (NCBI)XXYLT1  152002  xyloside xylosyltransferase 1
AliasesC3orf21
GeneCards (Weizmann)XXYLT1
Ensembl hg19 (Hinxton)ENSG00000173950 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173950 [Gene_View]  chr3:195068279-195247920 [Contig_View]  XXYLT1 [Vega]
ICGC DataPortalENSG00000173950
TCGA cBioPortalXXYLT1
AceView (NCBI)XXYLT1
Genatlas (Paris)XXYLT1
WikiGenes152002
SOURCE (Princeton)XXYLT1
Genetics Home Reference (NIH)XXYLT1
Genomic and cartography
GoldenPath hg38 (UCSC)XXYLT1  -     chr3:195068279-195247920 -  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XXYLT1  -     3q29   [Description]    (hg19-Feb_2009)
EnsemblXXYLT1 - 3q29 [CytoView hg19]  XXYLT1 - 3q29 [CytoView hg38]
Mapping of homologs : NCBIXXYLT1 [Mapview hg19]  XXYLT1 [Mapview hg38]
OMIM614552   
Gene and transcription
Genbank (Entrez)AI952430 AK057046 AK075551 AK092474 AK301133
RefSeq transcript (Entrez)NM_001308069 NM_152531
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XXYLT1
Cluster EST : UnigeneHs.744847 [ NCBI ]
CGAP (NCI)Hs.744847
Alternative Splicing GalleryENSG00000173950
Gene ExpressionXXYLT1 [ NCBI-GEO ]   XXYLT1 [ EBI - ARRAY_EXPRESS ]   XXYLT1 [ SEEK ]   XXYLT1 [ MEM ]
Gene Expression Viewer (FireBrowse)XXYLT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152002
GTEX Portal (Tissue expression)XXYLT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBI6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBI6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBI6
Splice isoforms : SwissVarQ8NBI6
PhosPhoSitePlusQ8NBI6
Domains : Interpro (EBI)Glyco_trans_8    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Glyco_transf_8 (PF01501)   
Domain families : Pfam (NCBI)pfam01501   
Conserved Domain (NCBI)XXYLT1
DMDM Disease mutations152002
Blocks (Seattle)XXYLT1
SuperfamilyQ8NBI6
Human Protein AtlasENSG00000173950
Peptide AtlasQ8NBI6
HPRD08757
IPIIPI00171410   IPI00165665   IPI00168035   IPI00910604   IPI00927901   IPI00924870   IPI00925004   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBI6
IntAct (EBI)Q8NBI6
FunCoupENSG00000173950
BioGRIDXXYLT1
STRING (EMBL)XXYLT1
ZODIACXXYLT1
Ontologies - Pathways
QuickGOQ8NBI6
Ontology : AmiGOmagnesium ion binding  O-glycan processing  manganese ion binding  integral component of endoplasmic reticulum membrane  UDP-xylosyltransferase activity  
Ontology : EGO-EBImagnesium ion binding  O-glycan processing  manganese ion binding  integral component of endoplasmic reticulum membrane  UDP-xylosyltransferase activity  
NDEx NetworkXXYLT1
Atlas of Cancer Signalling NetworkXXYLT1
Wikipedia pathwaysXXYLT1
Orthology - Evolution
OrthoDB152002
GeneTree (enSembl)ENSG00000173950
Phylogenetic Trees/Animal Genes : TreeFamXXYLT1
HOVERGENQ8NBI6
HOGENOMQ8NBI6
Homologs : HomoloGeneXXYLT1
Homology/Alignments : Family Browser (UCSC)XXYLT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXXYLT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XXYLT1
dbVarXXYLT1
ClinVarXXYLT1
1000_GenomesXXYLT1 
Exome Variant ServerXXYLT1
ExAC (Exome Aggregation Consortium)XXYLT1 (select the gene name)
Genetic variants : HAPMAP152002
Genomic Variants (DGV)XXYLT1 [DGVbeta]
DECIPHERXXYLT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisXXYLT1 
Mutations
ICGC Data PortalXXYLT1 
TCGA Data PortalXXYLT1 
Broad Tumor PortalXXYLT1
OASIS PortalXXYLT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICXXYLT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDXXYLT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch XXYLT1
DgiDB (Drug Gene Interaction Database)XXYLT1
DoCM (Curated mutations)XXYLT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XXYLT1 (select a term)
intoGenXXYLT1
Cancer3DXXYLT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614552   
Orphanet
MedgenXXYLT1
Genetic Testing Registry XXYLT1
NextProtQ8NBI6 [Medical]
TSGene152002
GENETestsXXYLT1
Target ValidationXXYLT1
Huge Navigator XXYLT1 [HugePedia]
snp3D : Map Gene to Disease152002
BioCentury BCIQXXYLT1
ClinGenXXYLT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152002
Chemical/Pharm GKB GenePA134925222
Clinical trialXXYLT1
Miscellaneous
canSAR (ICR)XXYLT1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXXYLT1
EVEXXXYLT1
GoPubMedXXYLT1
iHOPXXYLT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:14 CEST 2017

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