Atlas of Genetics and Cytogenetics in Oncology and Haematology


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XYLB (xylulokinase)

Identity

Alias_namesxylulokinase homolog (H. influenzae)
Alias_symbol (synonym)FLJ10343
FLJ12539
Other alias-
HGNC (Hugo) XYLB
LocusID (NCBI) 9942
Atlas_Id 75799
Location 3p22.2  [Link to chromosome band 3p22]
Location_base_pair Starts at 38346760 and ends at 38427183 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
XYLB (3p22.2) / ITGA9 (3p22.2)XYLB (3p22.2) / OXSR1 (3p22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XYLB   12839
Cards
Entrez_Gene (NCBI)XYLB  9942  xylulokinase
Aliases
GeneCards (Weizmann)XYLB
Ensembl hg19 (Hinxton)ENSG00000093217 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000093217 [Gene_View]  chr3:38346760-38427183 [Contig_View]  XYLB [Vega]
ICGC DataPortalENSG00000093217
TCGA cBioPortalXYLB
AceView (NCBI)XYLB
Genatlas (Paris)XYLB
WikiGenes9942
SOURCE (Princeton)XYLB
Genetics Home Reference (NIH)XYLB
Genomic and cartography
GoldenPath hg38 (UCSC)XYLB  -     chr3:38346760-38427183 +  3p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XYLB  -     3p22.2   [Description]    (hg19-Feb_2009)
EnsemblXYLB - 3p22.2 [CytoView hg19]  XYLB - 3p22.2 [CytoView hg38]
Mapping of homologs : NCBIXYLB [Mapview hg19]  XYLB [Mapview hg38]
OMIM604049   
Gene and transcription
Genbank (Entrez)AB015046 AK001205 AK022601 AK025728 AK293325
RefSeq transcript (Entrez)NM_001349178 NM_001349179 NM_001349180 NM_005108
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XYLB
Cluster EST : UnigeneHs.659985 [ NCBI ]
CGAP (NCI)Hs.659985
Alternative Splicing GalleryENSG00000093217
Gene ExpressionXYLB [ NCBI-GEO ]   XYLB [ EBI - ARRAY_EXPRESS ]   XYLB [ SEEK ]   XYLB [ MEM ]
Gene Expression Viewer (FireBrowse)XYLB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9942
GTEX Portal (Tissue expression)XYLB
Human Protein AtlasENSG00000093217-XYLB [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75191   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75191  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75191
Splice isoforms : SwissVarO75191
PhosPhoSitePlusO75191
Domains : Interpro (EBI)Carb_kinase_FGGY_C    Carb_kinase_FGGY_N   
Domain families : Pfam (Sanger)FGGY_C (PF02782)    FGGY_N (PF00370)   
Domain families : Pfam (NCBI)pfam02782    pfam00370   
Conserved Domain (NCBI)XYLB
DMDM Disease mutations9942
Blocks (Seattle)XYLB
PDB (SRS)4BC2    4BC3    4BC4    4BC5   
PDB (PDBSum)4BC2    4BC3    4BC4    4BC5   
PDB (IMB)4BC2    4BC3    4BC4    4BC5   
PDB (RSDB)4BC2    4BC3    4BC4    4BC5   
Structural Biology KnowledgeBase4BC2    4BC3    4BC4    4BC5   
SCOP (Structural Classification of Proteins)4BC2    4BC3    4BC4    4BC5   
CATH (Classification of proteins structures)4BC2    4BC3    4BC4    4BC5   
SuperfamilyO75191
Human Protein Atlas [tissue]ENSG00000093217-XYLB [tissue]
Peptide AtlasO75191
HPRD06812
IPIIPI00021107   IPI01014810   IPI00448831   IPI00921198   IPI00925671   IPI00924754   
Protein Interaction databases
DIP (DOE-UCLA)O75191
IntAct (EBI)O75191
FunCoupENSG00000093217
BioGRIDXYLB
STRING (EMBL)XYLB
ZODIACXYLB
Ontologies - Pathways
QuickGOO75191
Ontology : AmiGOxylulokinase activity  xylulokinase activity  ATP binding  cytoplasm  cytosol  carbohydrate metabolic process  xylulose metabolic process  xylulose catabolic process  generation of precursor metabolites and energy  glucuronate catabolic process to xylulose 5-phosphate  D-xylose metabolic process  carbohydrate phosphorylation  extracellular exosome  
Ontology : EGO-EBIxylulokinase activity  xylulokinase activity  ATP binding  cytoplasm  cytosol  carbohydrate metabolic process  xylulose metabolic process  xylulose catabolic process  generation of precursor metabolites and energy  glucuronate catabolic process to xylulose 5-phosphate  D-xylose metabolic process  carbohydrate phosphorylation  extracellular exosome  
Pathways : KEGGPentose and glucuronate interconversions   
NDEx NetworkXYLB
Atlas of Cancer Signalling NetworkXYLB
Wikipedia pathwaysXYLB
Orthology - Evolution
OrthoDB9942
GeneTree (enSembl)ENSG00000093217
Phylogenetic Trees/Animal Genes : TreeFamXYLB
HOVERGENO75191
HOGENOMO75191
Homologs : HomoloGeneXYLB
Homology/Alignments : Family Browser (UCSC)XYLB
Gene fusions - Rearrangements
Fusion: Tumor Portal XYLB
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXYLB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XYLB
dbVarXYLB
ClinVarXYLB
1000_GenomesXYLB 
Exome Variant ServerXYLB
ExAC (Exome Aggregation Consortium)ENSG00000093217
GNOMAD BrowserENSG00000093217
Genetic variants : HAPMAP9942
Genomic Variants (DGV)XYLB [DGVbeta]
DECIPHERXYLB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisXYLB 
Mutations
ICGC Data PortalXYLB 
TCGA Data PortalXYLB 
Broad Tumor PortalXYLB
OASIS PortalXYLB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICXYLB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDXYLB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch XYLB
DgiDB (Drug Gene Interaction Database)XYLB
DoCM (Curated mutations)XYLB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XYLB (select a term)
intoGenXYLB
Cancer3DXYLB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604049   
Orphanet
MedgenXYLB
Genetic Testing Registry XYLB
NextProtO75191 [Medical]
TSGene9942
GENETestsXYLB
Target ValidationXYLB
Huge Navigator XYLB [HugePedia]
snp3D : Map Gene to Disease9942
BioCentury BCIQXYLB
ClinGenXYLB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9942
Chemical/Pharm GKB GenePA37430
Clinical trialXYLB
Miscellaneous
canSAR (ICR)XYLB (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXYLB
EVEXXYLB
GoPubMedXYLB
iHOPXYLB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:36:01 CET 2017

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