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XYLT1 (xylosyltransferase 1)

Identity

Alias_namesxylosyltransferase I
Alias_symbol (synonym)XT-I
PXYLT1
Other aliasDBQD2
XT1
XTI
XYLTI
xylT-I
HGNC (Hugo) XYLT1
LocusID (NCBI) 64131
Atlas_Id 75800
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 17102324 and ends at 17470881 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MSN (Xq12) / XYLT1 (16p12.3)XYLT1 (16p12.3) / CSNK1D (17q25.3)ZBTB8B (1p35.1) / XYLT1 (16p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XYLT1   15516
Cards
Entrez_Gene (NCBI)XYLT1  64131  xylosyltransferase 1
AliasesDBQD2; PXYLT1; XT-I; XT1; 
XTI; XYLTI; xylT-I
GeneCards (Weizmann)XYLT1
Ensembl hg19 (Hinxton)ENSG00000103489 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103489 [Gene_View]  chr16:17102324-17470881 [Contig_View]  XYLT1 [Vega]
ICGC DataPortalENSG00000103489
TCGA cBioPortalXYLT1
AceView (NCBI)XYLT1
Genatlas (Paris)XYLT1
WikiGenes64131
SOURCE (Princeton)XYLT1
Genetics Home Reference (NIH)XYLT1
Genomic and cartography
GoldenPath hg38 (UCSC)XYLT1  -     chr16:17102324-17470881 -  16p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XYLT1  -     16p12.3   [Description]    (hg19-Feb_2009)
EnsemblXYLT1 - 16p12.3 [CytoView hg19]  XYLT1 - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBIXYLT1 [Mapview hg19]  XYLT1 [Mapview hg38]
OMIM264800   608124   615777   
Gene and transcription
Genbank (Entrez)AI524006 AJ277441 AJ539163 AK000198 AL050125
RefSeq transcript (Entrez)NM_022166
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XYLT1
Cluster EST : UnigeneHs.22907 [ NCBI ]
CGAP (NCI)Hs.22907
Alternative Splicing GalleryENSG00000103489
Gene ExpressionXYLT1 [ NCBI-GEO ]   XYLT1 [ EBI - ARRAY_EXPRESS ]   XYLT1 [ SEEK ]   XYLT1 [ MEM ]
Gene Expression Viewer (FireBrowse)XYLT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64131
GTEX Portal (Tissue expression)XYLT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86Y38   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86Y38  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86Y38
Splice isoforms : SwissVarQ86Y38
PhosPhoSitePlusQ86Y38
Domains : Interpro (EBI)Glyco_trans_14    XylT   
Domain families : Pfam (Sanger)Branch (PF02485)    Xylo_C (PF12529)   
Domain families : Pfam (NCBI)pfam02485    pfam12529   
Conserved Domain (NCBI)XYLT1
DMDM Disease mutations64131
Blocks (Seattle)XYLT1
SuperfamilyQ86Y38
Human Protein AtlasENSG00000103489
Peptide AtlasQ86Y38
HPRD12168
IPIIPI00183487   
Protein Interaction databases
DIP (DOE-UCLA)Q86Y38
IntAct (EBI)Q86Y38
FunCoupENSG00000103489
BioGRIDXYLT1
STRING (EMBL)XYLT1
ZODIACXYLT1
Ontologies - Pathways
QuickGOQ86Y38
Ontology : AmiGOGolgi membrane  Golgi membrane  extracellular region  endoplasmic reticulum membrane  glycosaminoglycan biosynthetic process  acetylglucosaminyltransferase activity  heparan sulfate proteoglycan biosynthetic process  integral component of membrane  protein xylosyltransferase activity  glycosaminoglycan metabolic process  chondroitin sulfate biosynthetic process  
Ontology : EGO-EBIGolgi membrane  Golgi membrane  extracellular region  endoplasmic reticulum membrane  glycosaminoglycan biosynthetic process  acetylglucosaminyltransferase activity  heparan sulfate proteoglycan biosynthetic process  integral component of membrane  protein xylosyltransferase activity  glycosaminoglycan metabolic process  chondroitin sulfate biosynthetic process  
Pathways : KEGGGlycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate    Glycosaminoglycan biosynthesis - heparan sulfate / heparin   
NDEx NetworkXYLT1
Atlas of Cancer Signalling NetworkXYLT1
Wikipedia pathwaysXYLT1
Orthology - Evolution
OrthoDB64131
GeneTree (enSembl)ENSG00000103489
Phylogenetic Trees/Animal Genes : TreeFamXYLT1
HOVERGENQ86Y38
HOGENOMQ86Y38
Homologs : HomoloGeneXYLT1
Homology/Alignments : Family Browser (UCSC)XYLT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXYLT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XYLT1
dbVarXYLT1
ClinVarXYLT1
1000_GenomesXYLT1 
Exome Variant ServerXYLT1
ExAC (Exome Aggregation Consortium)XYLT1 (select the gene name)
Genetic variants : HAPMAP64131
Genomic Variants (DGV)XYLT1 [DGVbeta]
DECIPHERXYLT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisXYLT1 
Mutations
ICGC Data PortalXYLT1 
TCGA Data PortalXYLT1 
Broad Tumor PortalXYLT1
OASIS PortalXYLT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICXYLT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDXYLT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch XYLT1
DgiDB (Drug Gene Interaction Database)XYLT1
DoCM (Curated mutations)XYLT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XYLT1 (select a term)
intoGenXYLT1
Cancer3DXYLT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM264800    608124    615777   
Orphanet1631    22503   
MedgenXYLT1
Genetic Testing Registry XYLT1
NextProtQ86Y38 [Medical]
TSGene64131
GENETestsXYLT1
Target ValidationXYLT1
Huge Navigator XYLT1 [HugePedia]
snp3D : Map Gene to Disease64131
BioCentury BCIQXYLT1
ClinGenXYLT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64131
Chemical/Pharm GKB GenePA37973
Clinical trialXYLT1
Miscellaneous
canSAR (ICR)XYLT1 (select the gene name)
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXYLT1
EVEXXYLT1
GoPubMedXYLT1
iHOPXYLT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:15 CEST 2017

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