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XYLT2 (xylosyltransferase 2)

Identity

Alias_namesxylosyltransferase II
Alias_symbol (synonym)XT-II
PXYLT2
Other aliasSOS
XT2
xylT-II
HGNC (Hugo) XYLT2
LocusID (NCBI) 64132
Atlas_Id 42852
Location 17q21.33  [Link to chromosome band 17q21]
Location_base_pair Starts at 50346032 and ends at 50361185 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SPOP (17q21.33) / XYLT2 (17q21.33)SPOP 17q21.33 / XYLT2 17q21.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XYLT2   15517
Cards
Entrez_Gene (NCBI)XYLT2  64132  xylosyltransferase 2
AliasesPXYLT2; SOS; XT-II; XT2; 
xylT-II
GeneCards (Weizmann)XYLT2
Ensembl hg19 (Hinxton)ENSG00000015532 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000015532 [Gene_View]  chr17:50346032-50361185 [Contig_View]  XYLT2 [Vega]
ICGC DataPortalENSG00000015532
TCGA cBioPortalXYLT2
AceView (NCBI)XYLT2
Genatlas (Paris)XYLT2
WikiGenes64132
SOURCE (Princeton)XYLT2
Genetics Home Reference (NIH)XYLT2
Genomic and cartography
GoldenPath hg38 (UCSC)XYLT2  -     chr17:50346032-50361185 +  17q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XYLT2  -     17q21.33   [Description]    (hg19-Feb_2009)
EnsemblXYLT2 - 17q21.33 [CytoView hg19]  XYLT2 - 17q21.33 [CytoView hg38]
Mapping of homologs : NCBIXYLT2 [Mapview hg19]  XYLT2 [Mapview hg38]
OMIM264800   605822   608125   
Gene and transcription
Genbank (Entrez)AJ277442 AK299999 AL833210 AY358090 BC017084
RefSeq transcript (Entrez)NM_022167
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XYLT2
Cluster EST : UnigeneHs.718822 [ NCBI ]
CGAP (NCI)Hs.718822
Alternative Splicing GalleryENSG00000015532
Gene ExpressionXYLT2 [ NCBI-GEO ]   XYLT2 [ EBI - ARRAY_EXPRESS ]   XYLT2 [ SEEK ]   XYLT2 [ MEM ]
Gene Expression Viewer (FireBrowse)XYLT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64132
GTEX Portal (Tissue expression)XYLT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1B5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1B5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1B5
Splice isoforms : SwissVarQ9H1B5
PhosPhoSitePlusQ9H1B5
Domains : Interpro (EBI)Glyco_trans_14    XylT   
Domain families : Pfam (Sanger)Branch (PF02485)    Xylo_C (PF12529)   
Domain families : Pfam (NCBI)pfam02485    pfam12529   
Conserved Domain (NCBI)XYLT2
DMDM Disease mutations64132
Blocks (Seattle)XYLT2
SuperfamilyQ9H1B5
Human Protein AtlasENSG00000015532
Peptide AtlasQ9H1B5
HPRD16286
IPIIPI00432723   IPI00964017   IPI00556347   IPI00965959   IPI00978726   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1B5
IntAct (EBI)Q9H1B5
FunCoupENSG00000015532
BioGRIDXYLT2
STRING (EMBL)XYLT2
ZODIACXYLT2
Ontologies - Pathways
QuickGOQ9H1B5
Ontology : AmiGOGolgi membrane  cellular_component  endoplasmic reticulum membrane  glycosaminoglycan biosynthetic process  acetylglucosaminyltransferase activity  heparan sulfate proteoglycan biosynthetic process  heparan sulfate proteoglycan biosynthetic process  integral component of membrane  protein xylosyltransferase activity  protein xylosyltransferase activity  glycosaminoglycan metabolic process  chondroitin sulfate biosynthetic process  heparin biosynthetic process  chondroitin sulfate proteoglycan biosynthetic process  
Ontology : EGO-EBIGolgi membrane  cellular_component  endoplasmic reticulum membrane  glycosaminoglycan biosynthetic process  acetylglucosaminyltransferase activity  heparan sulfate proteoglycan biosynthetic process  heparan sulfate proteoglycan biosynthetic process  integral component of membrane  protein xylosyltransferase activity  protein xylosyltransferase activity  glycosaminoglycan metabolic process  chondroitin sulfate biosynthetic process  heparin biosynthetic process  chondroitin sulfate proteoglycan biosynthetic process  
Pathways : KEGGGlycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate    Glycosaminoglycan biosynthesis - heparan sulfate / heparin   
NDEx NetworkXYLT2
Atlas of Cancer Signalling NetworkXYLT2
Wikipedia pathwaysXYLT2
Orthology - Evolution
OrthoDB64132
GeneTree (enSembl)ENSG00000015532
Phylogenetic Trees/Animal Genes : TreeFamXYLT2
HOVERGENQ9H1B5
HOGENOMQ9H1B5
Homologs : HomoloGeneXYLT2
Homology/Alignments : Family Browser (UCSC)XYLT2
Gene fusions - Rearrangements
Fusion : MitelmanSPOP/XYLT2 [17q21.33/17q21.33]  [t(17;17)(q21;q21)]  
Fusion: TCGASPOP 17q21.33 XYLT2 17q21.33 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXYLT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XYLT2
dbVarXYLT2
ClinVarXYLT2
1000_GenomesXYLT2 
Exome Variant ServerXYLT2
ExAC (Exome Aggregation Consortium)XYLT2 (select the gene name)
Genetic variants : HAPMAP64132
Genomic Variants (DGV)XYLT2 [DGVbeta]
DECIPHERXYLT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisXYLT2 
Mutations
ICGC Data PortalXYLT2 
TCGA Data PortalXYLT2 
Broad Tumor PortalXYLT2
OASIS PortalXYLT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICXYLT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDXYLT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch XYLT2
DgiDB (Drug Gene Interaction Database)XYLT2
DoCM (Curated mutations)XYLT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XYLT2 (select a term)
intoGenXYLT2
Cancer3DXYLT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM264800    605822    608125   
Orphanet11652   
MedgenXYLT2
Genetic Testing Registry XYLT2
NextProtQ9H1B5 [Medical]
TSGene64132
GENETestsXYLT2
Huge Navigator XYLT2 [HugePedia]
snp3D : Map Gene to Disease64132
BioCentury BCIQXYLT2
ClinGenXYLT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64132
Chemical/Pharm GKB GenePA37974
Clinical trialXYLT2
Miscellaneous
canSAR (ICR)XYLT2 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXYLT2
EVEXXYLT2
GoPubMedXYLT2
iHOPXYLT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:44:25 CEST 2017

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