Atlas of Genetics and Cytogenetics in Oncology and Haematology


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YAE1D1 (Yae1 domain containing 1)

Identity

Alias_namesC7orf36
chromosome 7 open reading frame 36
Alias_symbol (synonym)GK003
Other alias
HGNC (Hugo) YAE1D1
LocusID (NCBI) 57002
Atlas_Id 75801
Location 7p14.1  [Link to chromosome band 7p14]
Location_base_pair Starts at 39566376 and ends at 39612089 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CDK13 (7p14.1) / YAE1D1 (7p14.1)YAE1D1 (7p14.1) / YAE1D1 (7p14.1)YAE1D1 (7p14.1) / ZNF208 (19p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)YAE1D1   24857
Cards
Entrez_Gene (NCBI)YAE1D1  57002  Yae1 domain containing 1
AliasesC7orf36; GK003
GeneCards (Weizmann)YAE1D1
Ensembl hg19 (Hinxton)ENSG00000241127 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000241127 [Gene_View]  chr7:39566376-39612089 [Contig_View]  YAE1D1 [Vega]
ICGC DataPortalENSG00000241127
TCGA cBioPortalYAE1D1
AceView (NCBI)YAE1D1
Genatlas (Paris)YAE1D1
WikiGenes57002
SOURCE (Princeton)YAE1D1
Genetics Home Reference (NIH)YAE1D1
Genomic and cartography
GoldenPath hg38 (UCSC)YAE1D1  -     chr7:39566376-39612089 +  7p14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)YAE1D1  -     7p14.1   [Description]    (hg19-Feb_2009)
EnsemblYAE1D1 - 7p14.1 [CytoView hg19]  YAE1D1 - 7p14.1 [CytoView hg38]
Mapping of homologs : NCBIYAE1D1 [Mapview hg19]  YAE1D1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA157293 AF226046 AK096857 AK293511 AK314937
RefSeq transcript (Entrez)NM_001282446 NM_020192
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)YAE1D1
Cluster EST : UnigeneHs.83313 [ NCBI ]
CGAP (NCI)Hs.83313
Alternative Splicing GalleryENSG00000241127
Gene ExpressionYAE1D1 [ NCBI-GEO ]   YAE1D1 [ EBI - ARRAY_EXPRESS ]   YAE1D1 [ SEEK ]   YAE1D1 [ MEM ]
Gene Expression Viewer (FireBrowse)YAE1D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57002
GTEX Portal (Tissue expression)YAE1D1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRH1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRH1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRH1
Splice isoforms : SwissVarQ9NRH1
PhosPhoSitePlusQ9NRH1
Domains : Interpro (EBI)Essential_protein_Yae1_N   
Domain families : Pfam (Sanger)Yae1_N (PF09811)   
Domain families : Pfam (NCBI)pfam09811   
Conserved Domain (NCBI)YAE1D1
DMDM Disease mutations57002
Blocks (Seattle)YAE1D1
SuperfamilyQ9NRH1
Human Protein AtlasENSG00000241127
Peptide AtlasQ9NRH1
HPRD16669
IPIIPI00549169   IPI00909821   IPI00941621   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRH1
IntAct (EBI)Q9NRH1
FunCoupENSG00000241127
BioGRIDYAE1D1
STRING (EMBL)YAE1D1
ZODIACYAE1D1
Ontologies - Pathways
QuickGOQ9NRH1
Ontology : AmiGOtranslational initiation  ribosomal large subunit biogenesis  
Ontology : EGO-EBItranslational initiation  ribosomal large subunit biogenesis  
NDEx NetworkYAE1D1
Atlas of Cancer Signalling NetworkYAE1D1
Wikipedia pathwaysYAE1D1
Orthology - Evolution
OrthoDB57002
GeneTree (enSembl)ENSG00000241127
Phylogenetic Trees/Animal Genes : TreeFamYAE1D1
HOVERGENQ9NRH1
HOGENOMQ9NRH1
Homologs : HomoloGeneYAE1D1
Homology/Alignments : Family Browser (UCSC)YAE1D1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYAE1D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YAE1D1
dbVarYAE1D1
ClinVarYAE1D1
1000_GenomesYAE1D1 
Exome Variant ServerYAE1D1
ExAC (Exome Aggregation Consortium)YAE1D1 (select the gene name)
Genetic variants : HAPMAP57002
Genomic Variants (DGV)YAE1D1 [DGVbeta]
DECIPHERYAE1D1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisYAE1D1 
Mutations
ICGC Data PortalYAE1D1 
TCGA Data PortalYAE1D1 
Broad Tumor PortalYAE1D1
OASIS PortalYAE1D1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYAE1D1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDYAE1D1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch YAE1D1
DgiDB (Drug Gene Interaction Database)YAE1D1
DoCM (Curated mutations)YAE1D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YAE1D1 (select a term)
intoGenYAE1D1
Cancer3DYAE1D1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenYAE1D1
Genetic Testing Registry YAE1D1
NextProtQ9NRH1 [Medical]
TSGene57002
GENETestsYAE1D1
Target ValidationYAE1D1
Huge Navigator YAE1D1 [HugePedia]
snp3D : Map Gene to Disease57002
BioCentury BCIQYAE1D1
ClinGenYAE1D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57002
Chemical/Pharm GKB GenePA134961882
Clinical trialYAE1D1
Miscellaneous
canSAR (ICR)YAE1D1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYAE1D1
EVEXYAE1D1
GoPubMedYAE1D1
iHOPYAE1D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:15 CEST 2017

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