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YBEY (ybeY metallopeptidase (putative))

Identity

Alias_namesC21orf57
chromosome 21 open reading frame 57
Other alias
HGNC (Hugo) YBEY
LocusID (NCBI) 54059
Atlas_Id 75804
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 46286330 and ends at 46292521 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HLCS (21q22.13) / YBEY (21q22.3)MCM3AP-AS1 (21q22.3) / YBEY (21q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)YBEY   1299
Cards
Entrez_Gene (NCBI)YBEY  54059  ybeY metallopeptidase (putative)
AliasesC21orf57
GeneCards (Weizmann)YBEY
Ensembl hg19 (Hinxton)ENSG00000182362 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182362 [Gene_View]  chr21:46286330-46292521 [Contig_View]  YBEY [Vega]
ICGC DataPortalENSG00000182362
TCGA cBioPortalYBEY
AceView (NCBI)YBEY
Genatlas (Paris)YBEY
WikiGenes54059
SOURCE (Princeton)YBEY
Genetics Home Reference (NIH)YBEY
Genomic and cartography
GoldenPath hg38 (UCSC)YBEY  -     chr21:46286330-46292521 +  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)YBEY  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblYBEY - 21q22.3 [CytoView hg19]  YBEY - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIYBEY [Mapview hg19]  YBEY [Mapview hg38]
OMIM617461   
Gene and transcription
Genbank (Entrez)AI262212 AK128875 AK294975 AY040873 AY040874
RefSeq transcript (Entrez)NM_001006114 NM_001314022 NM_001314023 NM_001314024 NM_001314025 NM_001314026 NM_058181
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)YBEY
Cluster EST : UnigeneHs.474066 [ NCBI ]
CGAP (NCI)Hs.474066
Alternative Splicing GalleryENSG00000182362
Gene ExpressionYBEY [ NCBI-GEO ]   YBEY [ EBI - ARRAY_EXPRESS ]   YBEY [ SEEK ]   YBEY [ MEM ]
Gene Expression Viewer (FireBrowse)YBEY [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54059
GTEX Portal (Tissue expression)YBEY
Protein : pattern, domain, 3D structure
UniProt/SwissProtP58557   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP58557  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP58557
Splice isoforms : SwissVarP58557
PhosPhoSitePlusP58557
Domaine pattern : Prosite (Expaxy)UPF0054 (PS01306)   
Domains : Interpro (EBI)MetalPrtase_cat_dom_prd    YbeY    YbeY_CS   
Domain families : Pfam (Sanger)UPF0054 (PF02130)   
Domain families : Pfam (NCBI)pfam02130   
Conserved Domain (NCBI)YBEY
DMDM Disease mutations54059
Blocks (Seattle)YBEY
SuperfamilyP58557
Human Protein AtlasENSG00000182362
Peptide AtlasP58557
HPRD10754
IPIIPI00067923   IPI00215811   IPI00215812   IPI00215813   IPI00382827   
Protein Interaction databases
DIP (DOE-UCLA)P58557
IntAct (EBI)P58557
FunCoupENSG00000182362
BioGRIDYBEY
STRING (EMBL)YBEY
ZODIACYBEY
Ontologies - Pathways
QuickGOP58557
Ontology : AmiGOmetalloendopeptidase activity  nucleus  mitochondrion  rRNA processing  proteolysis  metal ion binding  
Ontology : EGO-EBImetalloendopeptidase activity  nucleus  mitochondrion  rRNA processing  proteolysis  metal ion binding  
NDEx NetworkYBEY
Atlas of Cancer Signalling NetworkYBEY
Wikipedia pathwaysYBEY
Orthology - Evolution
OrthoDB54059
GeneTree (enSembl)ENSG00000182362
Phylogenetic Trees/Animal Genes : TreeFamYBEY
HOVERGENP58557
HOGENOMP58557
Homologs : HomoloGeneYBEY
Homology/Alignments : Family Browser (UCSC)YBEY
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYBEY [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YBEY
dbVarYBEY
ClinVarYBEY
1000_GenomesYBEY 
Exome Variant ServerYBEY
ExAC (Exome Aggregation Consortium)YBEY (select the gene name)
Genetic variants : HAPMAP54059
Genomic Variants (DGV)YBEY [DGVbeta]
DECIPHERYBEY [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisYBEY 
Mutations
ICGC Data PortalYBEY 
TCGA Data PortalYBEY 
Broad Tumor PortalYBEY
OASIS PortalYBEY [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYBEY  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDYBEY
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch YBEY
DgiDB (Drug Gene Interaction Database)YBEY
DoCM (Curated mutations)YBEY (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YBEY (select a term)
intoGenYBEY
Cancer3DYBEY(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617461   
Orphanet
MedgenYBEY
Genetic Testing Registry YBEY
NextProtP58557 [Medical]
TSGene54059
GENETestsYBEY
Target ValidationYBEY
Huge Navigator YBEY [HugePedia]
snp3D : Map Gene to Disease54059
BioCentury BCIQYBEY
ClinGenYBEY
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54059
Chemical/Pharm GKB GenePA25852
Clinical trialYBEY
Miscellaneous
canSAR (ICR)YBEY (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYBEY
EVEXYBEY
GoPubMedYBEY
iHOPYBEY
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:15 CEST 2017

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