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YBEY (ybeY metalloendoribonuclease)

Identity

Alias (NCBI)C21orf57
HGNC (Hugo) YBEY
HGNC Previous nameC21orf57
HGNC Previous namechromosome 21 open reading frame 57
LocusID (NCBI) 54059
Atlas_Id 75804
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 46286342 and ends at 46297751 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HLCS (21q22.13) / YBEY (21q22.3)MCM3AP-AS1 (21q22.3) / YBEY (21q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)YBEY   1299
Cards
Entrez_Gene (NCBI)YBEY    ybeY metalloendoribonuclease
AliasesC21orf57
GeneCards (Weizmann)YBEY
Ensembl hg19 (Hinxton)ENSG00000182362 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182362 [Gene_View]  ENSG00000182362 [Sequence]  chr21:46286342-46297751 [Contig_View]  YBEY [Vega]
ICGC DataPortalENSG00000182362
TCGA cBioPortalYBEY
AceView (NCBI)YBEY
Genatlas (Paris)YBEY
SOURCE (Princeton)YBEY
Genetics Home Reference (NIH)YBEY
Genomic and cartography
GoldenPath hg38 (UCSC)YBEY  -     chr21:46286342-46297751 +  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)YBEY  -     21q22.3   [Description]    (hg19-Feb_2009)
GoldenPathYBEY - 21q22.3 [CytoView hg19]  YBEY - 21q22.3 [CytoView hg38]
ImmunoBaseENSG00000182362
Genome Data Viewer NCBIYBEY [Mapview hg19]  
OMIM617461   
Gene and transcription
Genbank (Entrez)AI262212 AK128875 AK294975 AY040873 AY040874
RefSeq transcript (Entrez)NM_001006114 NM_001314022 NM_001314023 NM_001314024 NM_001314025 NM_001314026 NM_058181
Consensus coding sequences : CCDS (NCBI)YBEY
Gene ExpressionYBEY [ NCBI-GEO ]   YBEY [ EBI - ARRAY_EXPRESS ]   YBEY [ SEEK ]   YBEY [ MEM ]
Gene Expression Viewer (FireBrowse)YBEY [ Firebrowse - Broad ]
GenevisibleExpression of YBEY in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54059
GTEX Portal (Tissue expression)YBEY
Human Protein AtlasENSG00000182362-YBEY [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP58557   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP58557  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP58557
PhosPhoSitePlusP58557
Domaine pattern : Prosite (Expaxy)UPF0054 (PS01306)   
Domains : Interpro (EBI)MetalPrtase_cat_dom_sf_prd    YbeY    YbeY_CS   
Domain families : Pfam (Sanger)UPF0054 (PF02130)   
Domain families : Pfam (NCBI)pfam02130   
Conserved Domain (NCBI)YBEY
SuperfamilyP58557
AlphaFold pdb e-kbP58557   
Human Protein Atlas [tissue]ENSG00000182362-YBEY [tissue]
HPRD10754
Protein Interaction databases
DIP (DOE-UCLA)P58557
IntAct (EBI)P58557
BioGRIDYBEY
STRING (EMBL)YBEY
ZODIACYBEY
Ontologies - Pathways
QuickGOP58557
Ontology : AmiGOmetalloendopeptidase activity  endoribonuclease activity  nucleus  rRNA processing  proteolysis  metal ion binding  RNA phosphodiester bond hydrolysis, endonucleolytic  
Ontology : EGO-EBImetalloendopeptidase activity  endoribonuclease activity  nucleus  rRNA processing  proteolysis  metal ion binding  RNA phosphodiester bond hydrolysis, endonucleolytic  
NDEx NetworkYBEY
Atlas of Cancer Signalling NetworkYBEY
Wikipedia pathwaysYBEY
Orthology - Evolution
OrthoDB54059
GeneTree (enSembl)ENSG00000182362
Phylogenetic Trees/Animal Genes : TreeFamYBEY
Homologs : HomoloGeneYBEY
Homology/Alignments : Family Browser (UCSC)YBEY
Gene fusions - Rearrangements
Fusion : QuiverYBEY
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYBEY [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YBEY
dbVarYBEY
ClinVarYBEY
MonarchYBEY
1000_GenomesYBEY 
Exome Variant ServerYBEY
GNOMAD BrowserENSG00000182362
Varsome BrowserYBEY
ACMGYBEY variants
VarityP58557
Genomic Variants (DGV)YBEY [DGVbeta]
DECIPHERYBEY [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisYBEY 
Mutations
ICGC Data PortalYBEY 
TCGA Data PortalYBEY 
Broad Tumor PortalYBEY
OASIS PortalYBEY [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYBEY  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DYBEY
Mutations and Diseases : HGMDYBEY
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaYBEY
DgiDB (Drug Gene Interaction Database)YBEY
DoCM (Curated mutations)YBEY
CIViC (Clinical Interpretations of Variants in Cancer)YBEY
Cancer3DYBEY
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617461   
Orphanet
DisGeNETYBEY
MedgenYBEY
Genetic Testing Registry YBEY
NextProtP58557 [Medical]
GENETestsYBEY
Target ValidationYBEY
Huge Navigator YBEY [HugePedia]
ClinGenYBEY
Clinical trials, drugs, therapy
MyCancerGenomeYBEY
Protein Interactions : CTDYBEY
Pharm GKB GenePA25852
PharosP58557
Clinical trialYBEY
Miscellaneous
canSAR (ICR)YBEY
HarmonizomeYBEY
DataMed IndexYBEY
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXYBEY
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:28:42 CEST 2021

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